ENSDARG00000018425


Danio rerio

Features
Gene ID: ENSDARG00000018425
  
Biological name :ddx61
  
Synonyms : ddx61 / DEAD (Asp-Glu-Ala-Asp) box helicase 61
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 25682577
Gene end: 25699657
  
Corresponding Affymetrix probe sets: Dr.15567.1.A1_at (Zebrafish Array)   Dr.18028.1.S1_at (Zebrafish Array)   Dr.18159.1.S1_at (Zebrafish Array)   XM_001340824_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000102837
Ensembl peptide - ENSDARP00000129311
NCBI entrez gene - 100007313     See in Manteia.
RefSeq - XM_001340824
swissprot - E7F1G8
ZFIN ID - ZDB-GENE-030131-6611
Ensembl - ENSDARG00000018425
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ddx6 / DEAD (Asp-Glu-Ala-Asp) box helicase 6 / P26196* / P54823* / DEAD-box helicase 6* / Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 (Ddx6), transcript variant 4, mRNA.*ENSDARG0000006133878


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006417 regulation of translation IBA
 biological_processGO:0009408 response to heat IGI
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 biological_processGO:0033962 cytoplasmic mRNA processing body assembly IBA
 biological_processGO:0034063 stress granule assembly IMP
 cellular_componentGO:0000932 P-body IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0010494 cytoplasmic stress granule IBA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000135 notochord notochord morphology , abnormal
Show

 ZFA:0000155 somite somite morphology , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curved , abnormal
Show

 ZFA:0005024 trunk vasculature trunk vasculature morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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