ENSDARG00000018890


Danio rerio

Features
Gene ID: ENSDARG00000018890
  
Biological name :snrpa
  
Synonyms : small nuclear ribonucleoprotein polypeptide A / snrpa
  
Possible biological names infered from orthology : Gm5145 / P09012 / Q62189 / U1 small nuclear ribonucleoprotein A
  
Species: Danio rerio
  
Chr. number: 18
Strand: -1
Band:
Gene start: 35402759
Gene end: 35407790
  
Corresponding Affymetrix probe sets: Dr.1930.1.S1_at (Zebrafish Array)   NM_199671_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000118605
Ensembl peptide - ENSDARP00000153873
Ensembl peptide - ENSDARP00000027914
Ensembl peptide - ENSDARP00000114911
NCBI entrez gene - 324121     See in Manteia.
RefSeq - NM_199671
RefSeq Peptide - NP_955965
swissprot - B0V3H3
swissprot - Q6P2T1
ZFIN ID - ZDB-GENE-030131-2841
Ensembl - ENSDARG00000018890
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNRPAENSG00000077312Homo sapiens
 Gm5145ENSMUSG00000071273Mus musculus
 SnrpaENSMUSG00000061479Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
snrpb2 / small nuclear ribonucleoprotein polypeptide B2 / P08579* / Q9CQI7* / U2 small nuclear ribonucleoprotein B *ENSDARG0000003942451


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034407  U1 small nuclear ribonucleoprotein A, RNA recognition motif 1
 IPR034409  U1 small nuclear ribonucleoprotein A, RNA recognition motif 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0005685 U1 snRNP IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0030619 U1 snRNA binding IBA
 molecular_functionGO:0035614 snRNA stem-loop binding IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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