ENSMUSG00000061479


Mus musculus

Features
Gene ID: ENSMUSG00000061479
  
Biological name :Snrpa
  
Synonyms : Q62189 / Snrpa / U1 small nuclear ribonucleoprotein A
  
Possible biological names infered from orthology : P09012 / small nuclear ribonucleoprotein polypeptide A
  
Species: Mus musculus
  
Chr. number: 7
Strand: -1
Band: A3
Gene start: 27187005
Gene end: 27196271
  
Corresponding Affymetrix probe sets: 10561194 (MoGene1.0st)   1417274_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000119818
Ensembl peptide - ENSMUSP00000131897
Ensembl peptide - ENSMUSP00000079228
Ensembl peptide - ENSMUSP00000113678
Ensembl peptide - ENSMUSP00000115335
NCBI entrez gene - 53607     See in Manteia.
MGI - MGI:1855690
RefSeq - NM_001046637
RefSeq - NM_001285825
RefSeq - NM_015782
RefSeq Peptide - NP_001272754
RefSeq Peptide - NP_056597
RefSeq Peptide - NP_001040102
swissprot - Q62189
swissprot - D3Z0S6
swissprot - D6RI83
Ensembl - ENSMUSG00000061479
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrpaENSDARG00000018890Danio rerio
 SNRPAENSG00000077312Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Gm5145 / SNRPA* / P09012* / small nuclear ribonucleoprotein polypeptide A*ENSMUSG0000007127390
Q9CQI7 / Snrpb2 / U2 small nuclear ribonucleoprotein B ENSMUSG0000000833353


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034407  U1 small nuclear ribonucleoprotein A, RNA recognition motif 1
 IPR034409  U1 small nuclear ribonucleoprotein A, RNA recognition motif 2
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex ISS
 cellular_componentGO:0005685 U1 snRNP ISS
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding ISS
 molecular_functionGO:0030619 U1 snRNA binding IBA
 molecular_functionGO:0035614 snRNA stem-loop binding IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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