ENSDARG00000019062


Danio rerio

Features
Gene ID: ENSDARG00000019062
  
Biological name :arpc5b
  
Synonyms : actin related protein 2/3 complex, subunit 5B / arpc5b
  
Possible biological names infered from orthology : actin related protein 2/3 complex subunit 5 / ARPC5 / O15511 / Q9CPW4
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 34151670
Gene end: 34155608
  
Corresponding Affymetrix probe sets: Dr.10390.1.S1_at (Zebrafish Array)   NM_201509_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000025370
Ensembl peptide - ENSDARP00000112695
Ensembl peptide - ENSDARP00000127093
NCBI entrez gene - 399482     See in Manteia.
RefSeq - NM_201509
RefSeq Peptide - NP_958917
swissprot - Q7ZWH4
swissprot - U3JA28
ZFIN ID - ZDB-GENE-040120-7
Ensembl - ENSDARG00000019062
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ARPC5ENSGALG00000020927Gallus gallus
 ARPC5ENSG00000162704Homo sapiens
 Arpc5ENSMUSG00000008475Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
arpc5a / actin related protein 2/3 complex, subunit 5A / ARPC5* / O15511* / Q9CPW4* / actin related protein 2/3 complex subunit 5*ENSDARG0000003914293
arpc5lb / actin related protein 2/3 complex, subunit 5-like, b / Q9D898* / ARPC5L* / Q9BPX5* / actin related protein 2/3 complex subunit 5 like* / Actin-related protein 2/3 complex subunit ...ENSDARG0000003543368
arpc5la / actin related protein 2/3 complex, subunit 5-like, a / Q9D898* / ARPC5L* / Q9BPX5* / actin related protein 2/3 complex subunit 5 like* / Actin-related protein 2/3 complex subunit ...ENSDARG0000004172067


Protein motifs (from Interpro)
Interpro ID Name
 IPR006789  Actin-related protein 2/3 complex subunit 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016477 cell migration IBA
 biological_processGO:0030833 regulation of actin filament polymerization IEA
 biological_processGO:0034314 Arp2/3 complex-mediated actin nucleation IEA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005885 Arp2/3 protein complex IBA
 cellular_componentGO:0015629 actin cytoskeleton IEA
 molecular_functionGO:0051015 actin filament binding IBA


Pathways (from Reactome)
Pathway description
Regulation of actin dynamics for phagocytic cup formation
EPHB-mediated forward signaling
RHO GTPases Activate WASPs and WAVEs
Neutrophil degranulation
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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