ENSDARG00000019280


Danio rerio

Features
Gene ID: ENSDARG00000019280
  
Biological name :larsb
  
Synonyms : larsb / leucyl-tRNA synthetase b
  
Possible biological names infered from orthology : LARS / Leucine--tRNA ligase, cytoplasmic / leucyl-tRNA synthetase / Q8BMJ2 / Q9P2J5
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 41026612
Gene end: 41070182
  
Corresponding Affymetrix probe sets: Dr.1928.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000003359
Ensembl peptide - ENSDARP00000113140
swissprot - F1QFN3
swissprot - F1RAQ9
ZFIN ID - ZDB-GENE-030114-7
Ensembl - ENSDARG00000019280
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LARSENSGALG00000007494Gallus gallus
 LARSENSG00000133706Homo sapiens
 LarsENSMUSG00000024493Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
larsa / leucyl-tRNA synthetase a / LARS* / Q9P2J5* / leucyl-tRNA synthetase*ENSDARG000000909880


Protein motifs (from Interpro)
Interpro ID Name
 IPR002300  Aminoacyl-tRNA synthetase, class Ia
 IPR004493  Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic
 IPR009008  Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain
 IPR009080  Aminoacyl-tRNA synthetase, class Ia, anticodon-binding
 IPR013155  Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding
 IPR014729  Rossmann-like alpha/beta/alpha sandwich fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006418 tRNA aminoacylation for protein translation IEA
 biological_processGO:0006429 leucyl-tRNA aminoacylation IBA
 biological_processGO:0006438 valyl-tRNA aminoacylation IBA
 biological_processGO:0106074 aminoacyl-tRNA metabolism involved in translational fidelity IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0002161 aminoacyl-tRNA editing activity IEA
 molecular_functionGO:0004812 aminoacyl-tRNA ligase activity IEA
 molecular_functionGO:0004823 leucine-tRNA ligase activity IBA
 molecular_functionGO:0004832 valine-tRNA ligase activity IBA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr