ENSDARG00000019572


Danio rerio

Features
Gene ID: ENSDARG00000019572
  
Biological name :taf7
  
Synonyms : taf7 / TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor
  
Possible biological names infered from orthology : Q15545 / Q9R1C0 / TATA-box binding protein associated factor 7 / Transcription initiation factor TFIID subunit 7
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 40852497
Gene end: 40874102
  
Corresponding Affymetrix probe sets: Dr.5284.1.S1_at (Zebrafish Array)   NM_173260_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000108885
Ensembl peptide - ENSDARP00000133252
NCBI entrez gene - 100002261     See in Manteia.
RefSeq - XM_005173300
RefSeq - NM_173260
RefSeq Peptide - NP_775367
swissprot - Q8JHG4
ZFIN ID - ZDB-GENE-020419-18
Ensembl - ENSDARG00000019572
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TAF7ENSGALG00000004999Gallus gallus
 TAF7ENSG00000178913Homo sapiens
 Taf7ENSMUSG00000051316Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006751  TAFII55 protein, conserved region


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter IEA
 biological_processGO:0051123 RNA polymerase II transcriptional preinitiation complex assembly IBA
 cellular_componentGO:0005669 transcription factor TFIID complex IBA
 molecular_functionGO:0003713 transcription coactivator activity IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IBA
 molecular_functionGO:0035035 histone acetyltransferase binding IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
Regulation of TP53 Activity through Phosphorylation
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
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 ZFA:0000282 sensory system sensory system quality , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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