ENSDARG00000019746


Danio rerio

Features
Gene ID: ENSDARG00000019746
  
Biological name :rfng
  
Synonyms : rfng / RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
  
Possible biological names infered from orthology : Beta-1,3-N-acetylglucosaminyltransferase radical fringe / O09009 / Q9Y644
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 3054442
Gene end: 3077395
  
Corresponding Affymetrix probe sets: Dr.11937.1.A1_at (Zebrafish Array)   Dr.18157.1.A1_at (Zebrafish Array)   NM_001001830_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000022107
Ensembl peptide - ENSDARP00000105906
NCBI entrez gene - 414848     See in Manteia.
RefSeq - NM_001001830
RefSeq Peptide - NP_001001830
swissprot - F1QXC7
ZFIN ID - ZDB-GENE-030131-5418
Ensembl - ENSDARG00000019746
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RFNGENSGALG00000002841Gallus gallus
 RFNGENSG00000169733Homo sapiens
 RfngENSMUSG00000025158Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lfng / Q8JHF2 / LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase / O09010* / Q8NES3* / Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe *ENSDARG0000003787952
mfng / Q5YB40 / MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase / O00587* / O09008* / Beta-1,3-N-acetylglucosaminyltransferase manic fringe *ENSDARG0000004292543


Protein motifs (from Interpro)
Interpro ID Name
 IPR003378  Fringe-like
 IPR017374  Fringe


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007389 pattern specification process IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030173 integral component of Golgi membrane IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016757 transferase activity, transferring glycosyl groups IEA
 molecular_functionGO:0033829 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000029 hindbrain hindbrain decreased width , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle structure , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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