ENSDARG00000020475


Danio rerio

Features
Gene ID: ENSDARG00000020475
  
Biological name :znrf1
  
Synonyms : Q6P4U6 / zinc and ring finger 1 / znrf1
  
Possible biological names infered from orthology : Q8ND25 / Q91V17
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 13406069
Gene end: 13471290
  
Corresponding Affymetrix probe sets: Dr.18421.1.A1_at (Zebrafish Array)   NM_200870_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000026082
NCBI entrez gene - 393844     See in Manteia.
RefSeq - NM_200870
RefSeq Peptide - NP_957164
swissprot - Q6P4U6
ZFIN ID - ZDB-GENE-040426-1905
Ensembl - ENSDARG00000020475
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ZNRF1ENSGALG00000029017Gallus gallus
 ZNRF1ENSG00000186187Homo sapiens
 Znrf1ENSMUSG00000033545Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
znrf2b / Q08CN9 / zinc and ring finger 2b / ZNRF2* / Q8NHG8* / zinc and ring finger 2*ENSDARG0000009879240
znrf2a / zinc and ring finger 2aENSDARG0000007785538
zgc:66427ENSDARG0000002330332


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process ISS
 biological_processGO:0070936 protein K48-linked ubiquitination ISS
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity ISS
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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