ENSDARG00000020573


Danio rerio

Features
Gene ID: ENSDARG00000020573
  
Biological name :ddx3a
  
Synonyms : ddx3a / DEAD (Asp-Glu-Ala-Asp) box helicase 3a
  
Possible biological names infered from orthology : ATP-dependent RNA helicase DDX3X / ATP-dependent RNA helicase DDX3Y / D1Pas1 / DDX3X / DDX3Y / DEAD-box helicase 3, X-linked / DEAD-box helicase 3, Y-linked / O00571 / O15523 / P16381 / Putative ATP-dependent RNA helicase Pl10 / Q62095 / Q62167
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 33334501
Gene end: 33354738
  
Corresponding Affymetrix probe sets: Dr.13657.1.A1_at (Zebrafish Array)   Dr.25544.1.S1_at (Zebrafish Array)   Dr.8412.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000002260
Ensembl peptide - ENSDARP00000113458
NCBI entrez gene - 566947     See in Manteia.
RefSeq - NM_001126423
RefSeq - XM_009304751
RefSeq Peptide - NP_001119895
swissprot - B0S6P7
swissprot - B0S6P6
ZFIN ID - ZDB-GENE-030131-1565
Ensembl - ENSDARG00000020573
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DDX3XENSGALG00000016231Gallus gallus
 DDX3XENSG00000215301Homo sapiens
 DDX3YENSG00000067048Homo sapiens
 D1Pas1ENSMUSG00000039224Mus musculus
 Ddx3xENSMUSG00000000787Mus musculus
 Ddx3yENSMUSG00000069045Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ddx3b / DEAD (Asp-Glu-Ala-Asp) box helicase 3b / DDX3X* / DDX3Y* / O15523* / O00571* / P16381* / D1Pas1* / Q62167* / Q62095* / DEAD-box helicase 3, Y-linked* / DEAD-box helicase 3, X-linked...ENSDARG0000000577483
ddx4 / DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 / Q61496* / Q9NQI0* / DEAD-box helicase 4* / ATP-dependent RNA helicase DDX4 *ENSDARG0000001437337
ddx59 / DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 / Q5T1V6* / Q9DBN9* / DEAD-box helicase 59* / Probable ATP-dependent RNA helicase DDX59 *ENSDARG0000002217721
ddx1 / DEAD (Asp-Glu-Ala-Asp) box helicase 1 / Q91VR5* / Q92499* / DEAD-box helicase 1* / ATP-dependent RNA helicase DDX1 *ENSDARG0000003211718


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006413 translational initiation IBA
 biological_processGO:0007059 chromosome segregation IBA
 biological_processGO:0010468 regulation of gene expression IBA
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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