ENSDARG00000020986


Danio rerio

Features
Gene ID: ENSDARG00000020986
  
Biological name :ctu1
  
Synonyms : ctu1 / cytosolic thiouridylase subunit 1 homolog (S. pombe) / Q803X1
  
Possible biological names infered from orthology : Cytoplasmic tRNA 2-thiolation protein 1 / cytosolic thiouridylase subunit 1 / Q7Z7A3 / Q99J10
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 3431671
Gene end: 3439484
  
Corresponding Affymetrix probe sets: Dr.16543.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000009303
Ensembl peptide - ENSDARP00000134794
NCBI entrez gene - 393098     See in Manteia.
RefSeq - NM_200130
RefSeq Peptide - NP_956424
swissprot - B2GNZ1
swissprot - A0A0R4IL58
swissprot - Q803X1
ZFIN ID - ZDB-GENE-040426-704
Ensembl - ENSDARG00000020986
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CTU1ENSG00000142544Homo sapiens
 Ctu1ENSMUSG00000038888Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000541  Cytoplasmic tRNA 2-thiolation protein 1
 IPR011063  tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal
 IPR014729  Rossmann-like alpha/beta/alpha sandwich fold
 IPR020554  Uncharacterised protein family UPF0021, conserved site
 IPR032442  Cytoplasmic tRNA 2-thiolation protein 1, C-terminal
 IPR035107  tRNA thiolation protein, TtcA/Ctu1 type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002098 tRNA wobble uridine modification IEA
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0032447 protein urmylation IEA
 biological_processGO:0034227 tRNA thio-modification IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol ISS
 molecular_functionGO:0000049 tRNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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