ENSDARG00000021265


Danio rerio

Features
Gene ID: ENSDARG00000021265
  
Biological name :mybpc2b
  
Synonyms : mybpc2b / myosin binding protein C, fast type b
  
Possible biological names infered from orthology : MYBPC2 / myosin binding protein C, fast type / Q14324 / Q5XKE0
  
Species: Danio rerio
  
Chr. number: 24
Strand: 1
Band:
Gene start: 38301080
Gene end: 38348805
  
Corresponding Affymetrix probe sets: Dr.21800.1.A1_at (Zebrafish Array)   NM_001013511_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000115895
Ensembl peptide - ENSDARP00000096449
NCBI entrez gene - 541384     See in Manteia.
RefSeq - NM_001013511
RefSeq - XM_017353828
RefSeq - XM_021470160
RefSeq - XM_021470159
RefSeq - XM_021470162
RefSeq - XM_021470161
RefSeq Peptide - NP_001013529
swissprot - F1R6I7
swissprot - F1Q699
ZFIN ID - ZDB-GENE-050320-80
Ensembl - ENSDARG00000021265
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MYBPC2ENSG00000086967Homo sapiens
 Mybpc2ENSMUSG00000038670Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
mybpc2a / myosin binding protein C, fast type a / Q5XKE0* / MYBPC2* / Q14324* / myosin binding protein C, fast type*ENSDARG0000003015773
mybpc3 / myosin binding protein C, cardiac / Q14896*ENSDARG0000001161560
mybpc1 / myosin binding protein C, slow type / Q00872*ENSDARG0000004556050
igfn1.2 / immunoglobulin-like and fibronectin type III domain containing 1, tandem duplicate 2 / IGFN1* / Q3KNY0* / Q86VF2* / immunoglobulin-like and fibronectin type III domain containing ...ENSDARG0000007592626
mybpha / myosin binding protein Ha / MYBPH* / A2RUH7* / MYBPHL* / P70402* / Q13203* / Q5FW53* / myosin binding protein H* / myosin binding protein H like* / Mus musculus myosin binding prot...ENSDARG0000005879924
igfn1.3 / immunoglobulin-like and fibronectin type III domain containing 1, tandem duplicate 3 / IGFN1* / Q3KNY0* / Q86VF2* / immunoglobulin-like and fibronectin type III domain containing ...ENSDARG0000009761324
mybphb / myosin binding protein Hb / MYBPH* / A2RUH7* / MYBPHL* / P70402* / Q13203* / Q5FW53* / myosin binding protein H* / myosin binding protein H like* / Mus musculus myosin binding prot...ENSDARG0000000308123
igfn1.4 / immunoglobulin-like and fibronectin type III domain containing 1, tandem duplicate 4 / IGFN1* / Q3KNY0* / Q86VF2* / immunoglobulin-like and fibronectin type III domain containing ...ENSDARG0000008602823
myom1a / myomesin 1a (skelemin) / MYOM1* / Q62234* / P52179* / myomesin 1*ENSDARG0000006124917
myom1b / myomesin 1b / MYOM1* / Q62234* / P52179* / myomesin 1*ENSDARG0000010483617
myom2a / myomesin 2a / MYOM2* / P54296* / myomesin 2*ENSDARG0000007543315
igfn1.1 / immunoglobulin-like and fibronectin type III domain containing 1, tandem duplicate 1 / IGFN1* / Q86VF2* / immunoglobulin-like and fibronectin type III domain containing 1*ENSDARG0000000552611
CABZ01061524.1 / MYOM2* / P54296* / myomesin 2*ENSDARG0000011069810


Protein motifs (from Interpro)
Interpro ID Name
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR003961  Fibronectin type III
 IPR007110  Immunoglobulin-like domain
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006941 striated muscle contraction IBA
 biological_processGO:0007015 actin filament organization IBA
 biological_processGO:0045214 sarcomere organization IBA
 biological_processGO:0060537 muscle tissue development IMP
 biological_processGO:0071688 striated muscle myosin thick filament assembly IBA
 cellular_componentGO:0005859 muscle myosin complex IBA
 cellular_componentGO:0030018 Z disc IBA
 cellular_componentGO:0031430 M band IBA
 molecular_functionGO:0008307 structural constituent of muscle IBA
 molecular_functionGO:0051015 actin filament binding IBA
 molecular_functionGO:0051371 muscle alpha-actinin binding IBA
 molecular_functionGO:0097493 structural molecule activity conferring elasticity IBA


Pathways (from Reactome)
Pathway description
Striated Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0001094 whole organism whole organism decreased length , abnormal
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 ZFA:0001115 trunk trunk skeletal muscle increased amount , abnormal
trunk skeletal muscle decreased amount , abnormal
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 ZFA:0005277 skeletal muscle skeletal muscle apoptotic process increased process quality , abnormal
skeletal muscle sarcomere decreased length , abnormal
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 ZFA:0009115 skeletal muscle cell skeletal muscle cell decreased thickness , abnormal
skeletal muscle cell increased variability of size , abnormal
skeletal muscle cell decondensed , abnormal
skeletal muscle cell actin filament decreased length , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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