ENSDARG00000045560


Danio rerio

Features
Gene ID: ENSDARG00000045560
  
Biological name :mybpc1
  
Synonyms : mybpc1 / myosin binding protein C, slow type
  
Possible biological names infered from orthology : Q00872
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 17726841
Gene end: 17793152
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000119677
Ensembl peptide - ENSDARP00000009148
Ensembl peptide - ENSDARP00000115680
swissprot - A5WWB7
swissprot - F1Q545
swissprot - F1R530
ZFIN ID - ZDB-GENE-041114-196
Ensembl - ENSDARG00000045560
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MYBPC1ENSGALG00000012783Gallus gallus
 MYBPC1ENSG00000196091Homo sapiens
 Mybpc1ENSMUSG00000020061Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
mybpc3 / myosin binding protein C, cardiac / Q14896*ENSDARG0000001161554
mybpc2a / myosin binding protein C, fast type a / Q5XKE0* / MYBPC2* / Q14324* / myosin binding protein C, fast type*ENSDARG0000003015749
mybpc2b / myosin binding protein C, fast type b / Q5XKE0* / MYBPC2* / Q14324* / myosin binding protein C, fast type*ENSDARG0000002126548
igfn1.2 / immunoglobulin-like and fibronectin type III domain containing 1, tandem duplicate 2 / IGFN1* / Q3KNY0* / Q86VF2* / immunoglobulin-like and fibronectin type III domain containing ...ENSDARG0000007592624
igfn1.3 / immunoglobulin-like and fibronectin type III domain containing 1, tandem duplicate 3 / IGFN1* / Q3KNY0* / Q86VF2* / immunoglobulin-like and fibronectin type III domain containing ...ENSDARG0000009761323
igfn1.4 / immunoglobulin-like and fibronectin type III domain containing 1, tandem duplicate 4 / IGFN1* / Q3KNY0* / Q86VF2* / immunoglobulin-like and fibronectin type III domain containing ...ENSDARG0000008602822
mybphb / myosin binding protein Hb / MYBPH* / A2RUH7* / MYBPHL* / P70402* / Q13203* / Q5FW53* / myosin binding protein H* / myosin binding protein H like* / Mus musculus myosin binding prot...ENSDARG0000000308121
mybpha / myosin binding protein Ha / MYBPH* / A2RUH7* / MYBPHL* / P70402* / Q13203* / Q5FW53* / myosin binding protein H* / myosin binding protein H like* / Mus musculus myosin binding prot...ENSDARG0000005879921
myom1a / myomesin 1a (skelemin) / MYOM1* / Q62234* / P52179* / myomesin 1*ENSDARG0000006124916
myom1b / myomesin 1b / MYOM1* / Q62234* / P52179* / myomesin 1*ENSDARG0000010483616
myom2a / myomesin 2a / MYOM2* / P54296* / myomesin 2*ENSDARG0000007543315
igfn1.1 / immunoglobulin-like and fibronectin type III domain containing 1, tandem duplicate 1 / IGFN1* / Q86VF2* / immunoglobulin-like and fibronectin type III domain containing 1*ENSDARG0000000552610
CABZ01061524.1 / MYOM2* / P54296* / myomesin 2*ENSDARG000001106989


Protein motifs (from Interpro)
Interpro ID Name
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR003961  Fibronectin type III
 IPR007110  Immunoglobulin-like domain
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006941 striated muscle contraction IBA
 biological_processGO:0007015 actin filament organization IBA
 biological_processGO:0045214 sarcomere organization IBA
 biological_processGO:0048741 skeletal muscle fiber development IMP
 biological_processGO:0071688 striated muscle myosin thick filament assembly IBA
 cellular_componentGO:0005859 muscle myosin complex IBA
 cellular_componentGO:0030018 Z disc IBA
 cellular_componentGO:0031430 M band IBA
 molecular_functionGO:0008307 structural constituent of muscle IBA
 molecular_functionGO:0051015 actin filament binding IBA
 molecular_functionGO:0051371 muscle alpha-actinin binding IBA
 molecular_functionGO:0097493 structural molecule activity conferring elasticity IBA


Pathways (from Reactome)
Pathway description
Striated Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain malformed , abnormal
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 ZFA:0000092 axis axis curved ventral , abnormal
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 ZFA:0000107 eye eye malformed , abnormal
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 ZFA:0000114 heart heart edematous , abnormal
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 ZFA:0001094 whole organism whole organism decreased life span , abnormal
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 ZFA:0001115 trunk trunk skeletal muscle increased amount , abnormal
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 ZFA:0009116 slow muscle cell slow muscle cell has fewer parts of type slow muscle cell myofibril, abnormal
slow muscle cell striated muscle thin filament disorganized , abnormal
slow muscle cell sarcomere malformed , abnormal
slow muscle cell sarcomere decreased amount , abnormal
slow muscle cell myosin filament disorganized , abnormal
slow muscle cell myofibril decreased size , abnormal
slow muscle cell myofibril disorganized , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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