ENSDARG00000023472


Danio rerio

Features
Gene ID: ENSDARG00000023472
  
Biological name :ctnnb2
  
Synonyms : catenin, beta 2 / ctnnb2
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 47975916
Gene end: 47997424
  
Corresponding Affymetrix probe sets: Dr.280.1.S1_at (Zebrafish Array)   NM_001001889_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000076115
NCBI entrez gene - 324004     See in Manteia.
RefSeq - NM_001001889
RefSeq Peptide - NP_001001889
swissprot - E7FC99
ZFIN ID - ZDB-GENE-040426-2575
Ensembl - ENSDARG00000023472
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ctnnb1 / catenin (cadherin-associated protein), beta 1 / P35222* / catenin beta 1*ENSDARG0000001457193
jupb / junction plakoglobin b / JUP* / P14923* / Q02257* / junction plakoglobin*ENSDARG0000005906761
jupa / junction plakoglobin a / JUP* / P14923* / Q02257* / junction plakoglobin*ENSDARG0000007078761


Protein motifs (from Interpro)
Interpro ID Name
 IPR000225  Armadillo
 IPR011989  Armadillo-like helical
 IPR013284  Beta-catenin
 IPR016024  Armadillo-type fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009953 dorsal/ventral pattern formation IMP
 biological_processGO:0034333 adherens junction assembly IEA
 biological_processGO:0060026 convergent extension IGI
 biological_processGO:0060070 canonical Wnt signaling pathway IGI
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0016342 catenin complex IBA
 molecular_functionGO:0004871 obsolete signal transducer activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019903 protein phosphatase binding IBA
 molecular_functionGO:0045294 alpha-catenin binding IBA
 molecular_functionGO:0045296 cadherin binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain decreased amount , abnormal
Show

 ZFA:0000075 spinal cord spinal cord decreased length , abnormal
spinal cord decreased width , abnormal
Show

 ZFA:0000107 eye eye aplastic , abnormal
Show

 ZFA:0000109 forebrain forebrain aplastic , abnormal
Show

 ZFA:0000135 notochord notochord aplastic , abnormal
Show

 ZFA:0001058 caudal fin caudal fin multiple , abnormal
caudal fin decreased amount , abnormal
Show

 ZFA:0001094 whole organism whole organism wholly ventralized , abnormal
whole organism posterior region malformed , abnormal
Show

 ZFA:0001114 head head necrotic , abnormal
Show

 ZFA:0001135 neural tube neural tube distended , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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