ENSDARG00000025094


Danio rerio

Features
Gene ID: ENSDARG00000025094
  
Biological name :edem1
  
Synonyms : edem1 / ER degradation enhancer, mannosidase alpha-like 1
  
Possible biological names infered from orthology : ER degradation enhancing alpha-mannosidase like protein 1 / Q925U4 / Q92611
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 42932757
Gene end: 42949184
  
Corresponding Affymetrix probe sets: Dr.11486.1.S1_at (Zebrafish Array)   NM_201189_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000120614
NCBI entrez gene - 394164     See in Manteia.
RefSeq - NM_201189
RefSeq Peptide - NP_957483
swissprot - E9QJF1
ZFIN ID - ZDB-GENE-040426-808
Ensembl - ENSDARG00000025094
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 EDEM1ENSGALG00000008320Gallus gallus
 EDEM1ENSG00000134109Homo sapiens
 Edem1ENSMUSG00000030104Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
edem3 / ER degradation enhancer, mannosidase alpha-like 3 / Q9BZQ6* / ER degradation enhancing alpha-mannosidase like protein 3*ENSDARG0000007412935
si:ch211-282j22.3ENSDARG0000001052434
edem2 / ER degradation enhancer, mannosidase alpha-like 2 / Q9BV94* / ER degradation enhancing alpha-mannosidase like protein 2*ENSDARG0000002844833


Protein motifs (from Interpro)
Interpro ID Name
 IPR001382  Glycoside hydrolase family 47


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006491 N-glycan processing IBA
 biological_processGO:0008152 metabolic process IEA
 cellular_componentGO:0000139 Golgi membrane IBA
 cellular_componentGO:0005783 endoplasmic reticulum IBA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IBA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016798 hydrolase activity, acting on glycosyl bonds IEA


Pathways (from Reactome)
Pathway description
ER Quality Control Compartment (ERQC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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