ENSDARG00000025535


Danio rerio

Features
Gene ID: ENSDARG00000025535
  
Biological name :clint1a
  
Synonyms : clathrin interactor 1a / clint1a
  
Possible biological names infered from orthology : clathrin interactor 1 / CLINT1 / Mus musculus clathrin interactor 1 (Clint1), transcript variant 2, mRNA. / Q14677
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 35279343
Gene end: 35390283
  
Corresponding Affymetrix probe sets: Dr.493.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000142283
Ensembl peptide - ENSDARP00000155381
Ensembl peptide - ENSDARP00000114046
Ensembl peptide - ENSDARP00000129957
swissprot - A0A140LGA4
swissprot - A7MCG0
swissprot - Q5U3J4
ZFIN ID - ZDB-GENE-030131-2590
Ensembl - ENSDARG00000025535
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CLINT1ENSGALG00000003702Gallus gallus
 CLINT1ENSG00000113282Homo sapiens
 Clint1ENSMUSG00000006169Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
clint1b / clathrin interactor 1b / CLINT1* / Q14677* / clathrin interactor 1*ENSDARG0000008991455
epn2 / epsin 2 / O95208* / Q8CHU3*ENSDARG0000000837722
epn1 / epsin 1 / Q80VP1* / Q9Y6I3*ENSDARG0000001041121
epn3a / epsin 3a / EPN3* / Q9H201* / Q91W69* / epsin 3*ENSDARG0000007895321
epn3b / epsin 3b / EPN3* / Q9H201* / Q91W69* / epsin 3*ENSDARG0000000463319
zgc:194578ENSDARG0000007984717


Protein motifs (from Interpro)
Interpro ID Name
 IPR008942  ENTH/VHS
 IPR013809  ENTH domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0045682 regulation of epidermis development IMP
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000084 yolk yolk non-functional , abnormal
yolk present , abnormal
Show

 ZFA:0000102 dorsal fin fold dorsal fin fold neutrophil mislocalised , abnormal
Show

 ZFA:0000105 epidermis epidermis malformed , abnormal
epidermis hemidesmosome decreased amount , abnormal
epidermis neutrophil mislocalised , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000112 gut gut hypoplastic , abnormal
gut decreased size , abnormal
gut quality , abnormal
Show

 ZFA:0000114 heart heart quality , abnormal
Show

 ZFA:0000123 liver liver hypoplastic , abnormal
liver decreased size , abnormal
liver quality , abnormal
Show

 ZFA:0000292 surface structure surface structure quality , abnormal
Show

 ZFA:0000368 integument integument rugose , abnormal
integument texture , abnormal
Show

 ZFA:0001058 caudal fin caudal fin epidermis hyperplastic , abnormal
Show

 ZFA:0001069 ventral fin fold ventral fin fold leukocyte mislocalised , abnormal
ventral fin fold neutrophil mislocalised , abnormal
ventral fin fold malformed , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased size , abnormal
whole organism decreased length , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk decreased size , abnormal
trunk decreased length , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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