ENSDARG00000027322


Danio rerio

Features
Gene ID: ENSDARG00000027322
  
Biological name :lin7c
  
Synonyms : lin7c / lin-7 homolog C (C. elegans)
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 31902333
Gene end: 31922432
  
Corresponding Affymetrix probe sets: Dr.25322.1.S1_at (Zebrafish Array)   Dr.25322.2.S1_at (Zebrafish Array)   Dr.25852.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000118823
Ensembl peptide - ENSDARP00000154898
NCBI entrez gene - 447934     See in Manteia.
swissprot - Q66IB0
ZFIN ID - ZDB-GENE-041011-2
Ensembl - ENSDARG00000027322
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lin7b / lin-7 homolog B (C. elegans) / B * / O88951* / Q9HAP6* / lin-7 homolog B, crumbs cell polarity complex component*ENSDARG0000003793281
lin7a / lin-7 homolog A (C. elegans) / O14910* / Q8JZS0* / lin-7 homolog A, crumbs cell polarity complex component*ENSDARG0000001341477
sntb1 / syntrophin, basic 1 / Q99L88* / Q13884* / syntrophin beta 1* / Beta-1-syntrophin *ENSDARG0000004172929
gopc / golgi-associated PDZ and coiled-coil motif containing / Q8BH60* / Q9HD26* / AL132671.2*ENSDARG0000002311726
sntb2 / syntrophin, beta 2 / Q13425* / Q61235* / syntrophin, basic 2*ENSDARG0000005176325
sntg2 / syntrophin, gamma 2 / Q925E0* / Q9NY99* / Gamma-2-syntrophin *ENSDARG0000010166024
sntg1 / syntrophin, gamma 1 / Q9NSN8*ENSDARG0000006183222
SNTA1 / syntrophin alpha 1 / Q13424*ENSDARG0000009842022


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR004172  L27 domain
 IPR014775  L27 domain, C-terminal
 IPR017365  Protein lin-7


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006887 exocytosis IEA
 biological_processGO:0007269 neurotransmitter secretion IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0045199 maintenance of epithelial cell apical/basal polarity IMP
 biological_processGO:1903361 protein localization to basolateral plasma membrane IBA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005911 cell-cell junction IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016323 basolateral plasma membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0045202 synapse IBA
 cellular_componentGO:0097025 MPP7-DLG1-LIN7 complex IEA
 cellular_componentGO:0098793 presynapse IEA
 molecular_functionGO:0097016 L27 domain binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000133 neural rod neural rod decreased length , abnormal
neural rod increased width , abnormal
Show

 ZFA:0000138 otic placode otic placode increased distance otic placode , abnormal
Show

 ZFA:0009306 neuroepithelial cell neuroepithelial cell apical-basal polarity , abnormal
neuroepithelial cell apical surface morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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