ENSDARG00000027602


Danio rerio

Features
Gene ID: ENSDARG00000027602
  
Biological name :lrfn1
  
Synonyms : leucine rich repeat and fibronectin type III domain containing 1 / lrfn1
  
Possible biological names infered from orthology : Leucine-rich repeat and fibronectin type III domain-containing protein 1 / Q2WF71 / Q9P244
  
Species: Danio rerio
  
Chr. number: 15
Strand: 1
Band:
Gene start: 45994123
Gene end: 46132191
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000111665
Ensembl peptide - ENSDARP00000089796
NCBI entrez gene - 393587     See in Manteia.
RefSeq - NM_200615
RefSeq Peptide - NP_956909
swissprot - E7EZ70
ZFIN ID - ZDB-GENE-040426-1227
Ensembl - ENSDARG00000027602
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LRFN1ENSG00000128011Homo sapiens
 Lrfn1ENSMUSG00000030600Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zgc:172282ENSDARG0000010505960
lrfn5a / leucine rich repeat and fibronectin type III domain containing 5a / LRFN5* / Q8BXA0* / Q96NI6* / leucine rich repeat and fibronectin type III domain containing 5* / Leucine-rich re...ENSDARG0000007123059
LRFN3 / zmp:0000001073 / Q8BLY3* / Q9BTN0* / leucine rich repeat and fibronectin type III domain containing 3* / Leucine-rich repeat and fibronectin type-III domain-containing protein 3 *ENSDARG0000003950056
lrfn5b / leucine rich repeat and fibronectin type III domain containing 5b / LRFN5* / Q8BXA0* / Q96NI6* / leucine rich repeat and fibronectin type III domain containing 5* / Leucine-rich re...ENSDARG0000007939653
BX548062.1 / LRFN2* / Q9ULH4* / leucine rich repeat and fibronectin type III domain containing 2*ENSDARG0000010624851
lrfn2b / leucine rich repeat and fibronectin type III domain containing 2b / LRFN2* / Q80TG9* / Q9ULH4* / leucine rich repeat and fibronectin type III domain containing 2* / Leucine-rich re...ENSDARG0000007748949
lrfn4b / leucine rich repeat and fibronectin type III domain containing 4b / LRFN4* / Q6PJG9* / Q80XU8* / leucine rich repeat and fibronectin type III domain containing 4* / Leucine-rich re...ENSDARG0000007807849
lrfn4a / leucine rich repeat and fibronectin type III domain containing 4a / LRFN4* / Q6PJG9* / Q80XU8* / leucine rich repeat and fibronectin type III domain containing 4* / Leucine-rich re...ENSDARG0000005513247
CABZ01060891.1 / LINGO3* / P0C6S8* / leucine rich repeat and Ig domain containing 3*ENSDARG0000006781522
lingo1a / leucine rich repeat and Ig domain containing 1a / Q9D1T0* / LINGO1* / Q96FE5* / leucine rich repeat and Ig domain containing 1* / Leucine-rich repeat and immunoglobulin-like domai...ENSDARG0000003416521
Q66HV9 / lingo1b / leucine rich repeat and Ig domain containing 1b / Q9D1T0* / LINGO1* / Q96FE5* / leucine rich repeat and Ig domain containing 1* / Leucine-rich repeat and immunoglobulin-l...ENSDARG0000003589921
lingo4b / leucine rich repeat and Ig domain containing 4b / LINGO4* / Q6UY18* / leucine rich repeat and Ig domain containing 4*ENSDARG0000007852721
lrrn3b / leucine rich repeat neuronal 3b / LRRN3* / Q9H3W5* / leucine rich repeat neuronal 3*ENSDARG0000010270221
lrrc4ba / leucine rich repeat containing 4Ba / Q9NT99* / LRRC4B* / P0C192* / leucine rich repeat containing 4B* / Leucine-rich repeat-containing protein 4B *ENSDARG0000000459720
lrrc4bb / leucine rich repeat containing 4Bb / Q9NT99* / LRRC4B* / P0C192* / leucine rich repeat containing 4B* / Leucine-rich repeat-containing protein 4B *ENSDARG0000001479220
si:dkey-6l15.1 / LRRC4C (1 of many) / LRRC4C* / Q8C031* / Q9HCJ2* / leucine rich repeat containing 4C* / Leucine-rich repeat-containing protein 4C *ENSDARG0000001673920
lrrn1 / leucine rich repeat neuronal 1 / Q61809* / Q6UXK5* / Leucine-rich repeat neuronal protein 1 *ENSDARG0000006011520
lingo3a / leucine rich repeat and Ig domain containing 3a / Q6GQU6* / LINGO3* / P0C6S8* / leucine rich repeat and Ig domain containing 3* / Leucine-rich repeat and immunoglobulin-like domai...ENSDARG0000006197020
lrrc4.1 / leucine rich repeat containing 4.1 / LRRC4* / Q99PH1* / Q9HBW1* / leucine rich repeat containing 4* / Leucine-rich repeat-containing protein 4 *ENSDARG0000006940220
lingo2b / leucine rich repeat and Ig domain containing 2b / LINGO2* / Q7L985* / Q3URE9* / leucine rich repeat and Ig domain containing 2*ENSDARG0000006997020


Protein motifs (from Interpro)
Interpro ID Name
 IPR000483  Cysteine-rich flanking region, C-terminal
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013783  Immunoglobulin-like fold
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
Synaptic adhesion-like molecules


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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