ENSDARG00000077489


Danio rerio

Features
Gene ID: ENSDARG00000077489
  
Biological name :lrfn2b
  
Synonyms : leucine rich repeat and fibronectin type III domain containing 2b / lrfn2b
  
Possible biological names infered from orthology : leucine rich repeat and fibronectin type III domain containing 2 / Leucine-rich repeat and fibronectin type-III domain-containing protein 2 / LRFN2 / Q80TG9 / Q9ULH4
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 25370
Gene end: 76300
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000098993
Ensembl peptide - ENSDARP00000126977
NCBI entrez gene - 558484     See in Manteia.
swissprot - E7FE43
swissprot - R4GER4
ZFIN ID - ZDB-GENE-121214-111
Ensembl - ENSDARG00000077489
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LRFN2ENSGALG00000010050Gallus gallus
 LRFN2ENSG00000156564Homo sapiens
 Lrfn2ENSMUSG00000040490Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
BX548062.1 / LRFN2* / Q9ULH4* / leucine rich repeat and fibronectin type III domain containing 2*ENSDARG0000010624868
lrfn4b / leucine rich repeat and fibronectin type III domain containing 4b / LRFN4* / Q6PJG9* / Q80XU8* / leucine rich repeat and fibronectin type III domain containing 4* / Leucine-rich re...ENSDARG0000007807846
lrfn4a / leucine rich repeat and fibronectin type III domain containing 4a / LRFN4* / Q6PJG9* / Q80XU8* / leucine rich repeat and fibronectin type III domain containing 4* / Leucine-rich re...ENSDARG0000005513245
lrfn5a / leucine rich repeat and fibronectin type III domain containing 5a / LRFN5* / Q8BXA0* / Q96NI6* / leucine rich repeat and fibronectin type III domain containing 5* / Leucine-rich re...ENSDARG0000007123045
lrfn5b / leucine rich repeat and fibronectin type III domain containing 5b / LRFN5* / Q8BXA0* / Q96NI6* / leucine rich repeat and fibronectin type III domain containing 5* / Leucine-rich re...ENSDARG0000007939644
zgc:172282ENSDARG0000010505941
LRFN3 / zmp:0000001073 / Q8BLY3* / Q9BTN0* / leucine rich repeat and fibronectin type III domain containing 3* / Leucine-rich repeat and fibronectin type-III domain-containing protein 3 *ENSDARG0000003950038
lrfn1 / leucine rich repeat and fibronectin type III domain containing 1 / Q2WF71* / Q9P244* / Leucine-rich repeat and fibronectin type III domain-containing protein 1 *ENSDARG0000002760236
lingo2b / leucine rich repeat and Ig domain containing 2b / LINGO2* / Q7L985* / Q3URE9* / leucine rich repeat and Ig domain containing 2*ENSDARG0000006997018
lingo2a / leucine rich repeat and Ig domain containing 2a / LINGO2* / Q7L985* / Q3URE9* / leucine rich repeat and Ig domain containing 2*ENSDARG0000007453518
lrrn3b / leucine rich repeat neuronal 3b / LRRN3* / Q9H3W5* / leucine rich repeat neuronal 3*ENSDARG0000010270218
lrrc4ba / leucine rich repeat containing 4Ba / Q9NT99* / LRRC4B* / P0C192* / leucine rich repeat containing 4B* / Leucine-rich repeat-containing protein 4B *ENSDARG0000000459717
lrrc4bb / leucine rich repeat containing 4Bb / Q9NT99* / LRRC4B* / P0C192* / leucine rich repeat containing 4B* / Leucine-rich repeat-containing protein 4B *ENSDARG0000001479217
lingo1a / leucine rich repeat and Ig domain containing 1a / Q9D1T0* / LINGO1* / Q96FE5* / leucine rich repeat and Ig domain containing 1* / Leucine-rich repeat and immunoglobulin-like domai...ENSDARG0000003416517
lingo3a / leucine rich repeat and Ig domain containing 3a / Q6GQU6* / LINGO3* / P0C6S8* / leucine rich repeat and Ig domain containing 3* / Leucine-rich repeat and immunoglobulin-like domai...ENSDARG0000006197017
CABZ01060891.1 / LINGO3* / P0C6S8* / leucine rich repeat and Ig domain containing 3*ENSDARG0000006781517
si:ch211-180f4.1ENSDARG0000007711217
lrrn3a / leucine rich repeat neuronal 3a / LRRN3* / Q8CBC6* / Q9H3W5* / leucine rich repeat neuronal 3* / Leucine-rich repeat neuronal protein 3 *ENSDARG0000007756917
lrrc4c / leucine rich repeat containing 4C / Q9HCJ2*ENSDARG0000011341117
lrrc4.2 / leucine rich repeat containing 4.2 / LRRC4* / Q99PH1* / Q9HBW1* / leucine rich repeat containing 4* / Leucine-rich repeat-containing protein 4 *ENSDARG0000000302016


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR003961  Fibronectin type III
 IPR007110  Immunoglobulin-like domain
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007409 axonogenesis IBA
 cellular_componentGO:0005615 extracellular space IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
Synaptic adhesion-like molecules


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000078149 grin2ca / glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca / Q14957* / GRIN2C* / Q01098* / Glutamate receptor ionotropic, NMDA 2C * / glutamate ionotropic receptor NMDA type subunit 2C*  / complex / reaction
 ENSDARG00000077560 grin2cb / glutamate receptor, ionotropic, N-methyl D-aspartate 2Cb / Q14957* / GRIN2C* / Q01098* / Glutamate receptor ionotropic, NMDA 2C * / glutamate ionotropic receptor NMDA type subunit 2C*  / complex / reaction
 ENSDARG00000070543 grin2ab / glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b / Q12879* / GRIN2A* / P35436* / Glutamate receptor ionotropic, NMDA 2A * / glutamate ionotropic receptor NMDA type subunit 2A*  / complex / reaction
 ENSDARG00000009677 dlg1 / Q5PYH6 / discs, large homolog 1 (Drosophila) / Q12959* / Q811D0* / Disks large homolog 1 * / discs large MAGUK scaffold protein 1*  / complex / reaction
 ENSDARG00000091348 rtn3 / reticulon 3 / O95197* / Q9ES97*  / complex / reaction
 ENSDARG00000077489 lrfn2b / leucine rich repeat and fibronectin type III domain containing 2b / LRFN2* / Q80TG9* / Q9ULH4* / leucine rich repeat and fibronectin type III domain containing 2* / Leucine-rich re...  / complex / reaction
 ENSDARG00000055132 lrfn4a / leucine rich repeat and fibronectin type III domain containing 4a / LRFN4* / Q6PJG9* / Q80XU8* / leucine rich repeat and fibronectin type III domain containing 4* / Leucine-rich re...  / complex / reaction
 ENSDARG00000102216 dlg1l / Q5PYH5 / discs, large (Drosophila) homolog 1, like / DLG1* / Q12959* / Q811D0* / Disks large homolog 1 * / discs large MAGUK scaffold protein 1*  / complex / reaction
 ENSDARG00000106248 BX548062.1 / LRFN2* / Q9ULH4* / leucine rich repeat and fibronectin type III domain containing 2*  / complex / reaction
 ENSDARG00000086207 grin2da / glutamate receptor, ionotropic, N-methyl D-aspartate 2D, a / Q03391* / GRIN2D* / O15399* / Glutamate receptor ionotropic, NMDA 2D * / glutamate ionotropic receptor NMDA type subunit 2D*  / complex / reaction
 ENSDARG00000030376 grin2bb / glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b / GRIN2B* / Q13224* / glutamate receptor, ionotropic, NMDA2B (epsilon 2)* / glutamate ionotropic recept...  / complex / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr