ENSDARG00000029898


Danio rerio

Features
Gene ID: ENSDARG00000029898
  
Biological name :si:dkey-22i16.2
  
Synonyms : si:dkey-22i16.2
  
Possible biological names infered from orthology : cGMP-gated cation channel alpha-1 / CNGA1 / cyclic nucleotide gated channel alpha 1 / P29973 / P29974
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 43894238
Gene end: 43899422
  
Corresponding Affymetrix probe sets: Dr.11194.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000048224
Ensembl peptide - ENSDARP00000115254
NCBI entrez gene - 100001558     See in Manteia.
swissprot - B8JHY6
ZFIN ID - ZDB-GENE-090312-66
Ensembl - ENSDARG00000029898
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CNGA1ENSGALG00000014136Gallus gallus
 CNGA1ENSG00000198515Homo sapiens
 Cnga1ENSMUSG00000067220Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cnga1 / cyclic nucleotide gated channel alpha 1 / P29973* / P29974* / cGMP-gated cation channel alpha-1 *ENSDARG0000001212561
cnga3a / cyclic nucleotide gated channel alpha 3a / CNGA3* / Q16281* / Q9JJZ8* / cyclic nucleotide gated channel alpha 3* / Cyclic nucleotide-gated cation channel alpha-3 *ENSDARG0000007072651
cnga3b / cyclic nucleotide gated channel alpha 3b / CNGA3* / Q16281* / Q9JJZ8* / cyclic nucleotide gated channel alpha 3* / Cyclic nucleotide-gated cation channel alpha-3 *ENSDARG0000001229749
cnga5 / cyclic nucleotide gated channel alpha 5 / CNGA2* / Q62398* / Q16280* / cyclic nucleotide gated channel alpha 2* / Cyclic nucleotide-gated olfactory channel *ENSDARG0000010296848
cnga2 / cyclic nucleotide gated channel alpha 2 / Q16280*ENSDARG0000010043647
cnga4 / cyclic nucleotide gated channel alpha 4 / Q3UW12* / Q8IV77* / Cyclic nucleotide-gated cation channel alpha-4 *ENSDARG0000006938339
cngb1a / cyclic nucleotide gated channel beta 1a / CNGB1* / Q14028* / cyclic nucleotide gated channel beta 1*ENSDARG0000006824225
si:dkey-44k1.5 / CNGB1* / Q14028* / cyclic nucleotide gated channel beta 1*ENSDARG0000004210724
cngb3.2 / cyclic nucleotide gated channel beta 3, tandem duplicate 2 / CNGB3* / Q9JJZ9* / Q9NQW8* / cyclic nucleotide gated channel beta 3* / Cyclic nucleotide-gated cation channel beta-3 *ENSDARG0000010136824
cngb3.1 / cyclic nucleotide gated channel beta 3, tandem duplicate 1 / CNGB3* / Q9JJZ9* / Q9NQW8* / cyclic nucleotide gated channel beta 3* / Cyclic nucleotide-gated cation channel beta-3 *ENSDARG0000010122523
hcn2b / hyperpolarization activated cyclic nucleotide-gated potassium channel 2bENSDARG0000006166519
hcn4 / hyperpolarization activated cyclic nucleotide-gated potassium channel 4 / Q9Y3Q4*ENSDARG0000006168519
hcn1 / hyperpolarization activated cyclic nucleotide-gated potassium channel 1 / O60741* / O88704* / Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 *ENSDARG0000010448019
hcn3 / hyperpolarization activated cyclic nucleotide-gated potassium channel 3 / O88705* / Q9P1Z3* / Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3 *ENSDARG0000002719218
hcn4l / hyperpolarization activated cyclic nucleotide-gated potassium channel 4l / HCN4* / Q9Y3Q4* / hyperpolarization activated cyclic nucleotide gated potassium channel 4*ENSDARG0000007441918
si:rp71-68n21.12ENSDARG0000007738216
CABZ01086574.1 / HCN4* / Q9Y3Q4* / hyperpolarization activated cyclic nucleotide gated potassium channel 4*ENSDARG000001164046


Protein motifs (from Interpro)
Interpro ID Name
 IPR000595  Cyclic nucleotide-binding domain
 IPR005821  Ion transport domain
 IPR014710  RmlC-like jelly roll fold
 IPR018488  Cyclic nucleotide-binding, conserved site
 IPR018490  Cyclic nucleotide-binding-like
 IPR032406  Cyclic nucleotide-gated channel, C-terminal leucine zipper domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0034220 ion transmembrane transport IEA
 biological_processGO:0042391 regulation of membrane potential IBA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0071805 potassium ion transmembrane transport IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005249 voltage-gated potassium channel activity IBA


Pathways (from Reactome)
Pathway description
Activation of the phototransduction cascade
Inactivation, recovery and regulation of the phototransduction cascade


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000012125 cnga1 / cyclic nucleotide gated channel alpha 1 / P29973* / P29974* / cGMP-gated cation channel alpha-1 *  / complex
 ENSDARG00000029898 si:dkey-22i16.2 / CNGA1* / P29973* / P29974* / cGMP-gated cation channel alpha-1 * / cyclic nucleotide gated channel alpha 1*  / complex
 ENSDARG00000100825 calm2a / calm2b / calm3a / Q6PI52 / calmodulin 2a (phosphorylase kinase, delta)  / complex / reaction






 

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