ENSDARG00000030215
Danio rerio | |
Features
| Gene ID: | ENSDARG00000030215 | | | | | Biological name : | matn1 | | | | | Synonyms : | matn1 / matrilin 1 | | | | | Possible biological names infered from orthology : | Cartilage matrix protein / matrilin 1, cartilage matrix protein / P21941 / P51942 | | | | | Species: | Danio rerio | | | | | Chr. number: | 19 | | Strand: | 1 | | Band: | | | Gene start: | 43314700 | | Gene end: | 43338280 | | | | | Corresponding Affymetrix probe sets: | Dr.21066.1.S1_at (Zebrafish Array) | | | | | Cross references: | Ensembl peptide - ENSDARP00000049044
Ensembl peptide - ENSDARP00000114207
NCBI entrez gene - 403023
See in Manteia.
RefSeq - NM_001099740
RefSeq Peptide - NP_001093210
swissprot - A5WWJ5
swissprot - A5WWJ4
ZFIN ID - ZDB-GENE-050307-3
Ensembl - ENSDARG00000030215
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See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed
Ortholog prediction (from Ensembl)
Paralog prediction (from Ensembl)
| matn4 / matrilin 4 / Q8VCP9* / O95460* / Q86T13* / CLEC14A* / C-type lectin domain containing 14A* / C-type lectin domain family 14 member A * | ENSDARG00000015947 | 52 | | matn3a / matrilin 3a / MATN3* / O35701* / O15232* / matrilin 3* | ENSDARG00000069245 | 28 | | matn3b / matrilin 3b / MATN3* / O35701* / O15232* / matrilin 3* | ENSDARG00000069265 | 25 | | vwa1 / von Willebrand factor A domain containing 1 / Q6PCB0* / Q8R2Z5* | ENSDARG00000075468 | 16 | | scube3 / signal peptide, CUB domain, EGF-like 3 / Q8IX30* / signal peptide, CUB domain and EGF like domain containing 3* | ENSDARG00000011490 | 12 | | scube2 / signal peptide, CUB domain, EGF-like 2 / Q9NQ36* / Q9JJS0* / signal peptide, CUB domain and EGF like domain containing 2* / Signal peptide, CUB and EGF-like domain-containing protein 2 * | ENSDARG00000037362 | 12 | | scube1 / signal peptide, CUB domain, EGF-like 1 / Q6NZL8* / Q8IWY4* / signal peptide, CUB domain and EGF like domain containing 1* | ENSDARG00000063097 | 11 | | cd248b / CD248 molecule, endosialin b / CD248* / Q9HCU0* / Q91V98* / Endosialin * / CD248 molecule* | ENSDARG00000077938 | 9 | | thbd / thrombomodulin / P07204* / P15306* | ENSDARG00000092470 | 9 | | cd248a / CD248 molecule, endosialin a / CD248* / Q9HCU0* / Q91V98* / Endosialin * / CD248 molecule* | ENSDARG00000103713 | 9 | | si:dkey-163f14.6 | ENSDARG00000091602 | 6 |
Protein motifs (from Interpro)
Gene Ontology (GO)
Pathways (from Reactome)
Phenotype (from MGI, Zfin or HPO)
| ZFA:0000075 | spinal cord | spinal cord apoptotic DNA fragmentation increased process quality , abnormal |
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| | ZFA:0000106 | extension | extension shortened , abnormal |
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| | ZFA:0000107 | eye | eye apoptotic DNA fragmentation increased process quality , abnormal
eye decreased pigmentation , abnormal |
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| | ZFA:0000368 | integument | integument detached from whole organism , abnormal |
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| | ZFA:0001058 | caudal fin | caudal fin curved , abnormal
caudal fin deformed , abnormal |
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| | ZFA:0001094 | whole organism | whole organism decreased size , abnormal
whole organism decreased pigmentation , abnormal |
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| | ZFA:0001114 | head | head malformed , abnormal |
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| | ZFA:0001115 | trunk | trunk curved , abnormal |
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| | ZFA:0001306 | pharyngeal arch | pharyngeal arch cartilage element immature , abnormal |
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| | ZFA:0001461 | chondrocranium cartilage | chondrocranium cartilage cartilage element immature , abnormal |
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| | ZFA:0001462 | somite border | somite border deformed , abnormal |
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| | ZFA:0009084 | chondrocyte | chondrocyte endoplasmic reticulum increased size , abnormal
chondrocyte endoplasmic reticulum disorganized , abnormal
chondrocyte endoplasmic reticulum lumen distended , abnormal |
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Interacting proteins (from Reactome)
No match
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