ENSDARG00000030832


Danio rerio

Features
Gene ID: ENSDARG00000030832
  
Biological name :otofa
  
Synonyms : otofa / otoferlin a / Q5SPC5
  
Possible biological names infered from orthology : OTOF / otoferlin / otoferlin isoform 3 / Q9HC10
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 31076488
Gene end: 31212556
  
Corresponding Affymetrix probe sets: Dr.22365.1.A1_at (Zebrafish Array)   NM_001030112_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000127249
Ensembl peptide - ENSDARP00000007932
Ensembl peptide - ENSDARP00000118166
Ensembl peptide - ENSDARP00000127284
NCBI entrez gene - 557476     See in Manteia.
RefSeq - NM_001030112
RefSeq - XM_009294744
RefSeq Peptide - NP_001025283
swissprot - U3JAI1
swissprot - U3JAL6
swissprot - X1WB77
swissprot - Q5SPC5
ZFIN ID - ZDB-GENE-030131-7778
Ensembl - ENSDARG00000030832
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 OTOFENSGALG00000016577Gallus gallus
 OTOFENSG00000115155Homo sapiens
 OtofENSMUSG00000062372Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
otofb / otoferlin b / OTOF* / Q9HC10* / otoferlin* / otoferlin isoform 3 *ENSDARG0000002058172
fer1l6 / fer-1-like family member 6 / Q2WGJ9*ENSDARG0000001931644
fer1l4 / fer-1-like family member 4ENSDARG0000007695241
myof / myoferlin / Q69ZN7* / Q9NZM1*ENSDARG0000000611232
dysf / dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive) / O75923* / Q9ESD7* / dysferlin*ENSDARG0000000737032
myofl / myoferlin like / MYOF* / Q9NZM1* / myoferlin*ENSDARG0000001712830


Protein motifs (from Interpro)
Interpro ID Name
 IPR000008  C2 domain
 IPR012561  Ferlin B-domain
 IPR012968  FerIin domain
 IPR029996  Otoferlin
 IPR032362  Ferlin, C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010996 response to auditory stimulus IGI
 biological_processGO:0016079 synaptic vesicle exocytosis ISS
 biological_processGO:0050885 neuromuscular process controlling balance IGI
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016323 basolateral plasma membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030672 synaptic vesicle membrane ISS
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0098793 presynapse IEA
 molecular_functionGO:0005509 calcium ion binding ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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