ENSDARG00000032997


Danio rerio

Features
Gene ID: ENSDARG00000032997
  
Biological name :rnf185
  
Synonyms : Q6PC78 / ring finger protein 185 / rnf185
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase RNF185 / Q91YT2
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 1055042
Gene end: 1070794
  
Corresponding Affymetrix probe sets: Dr.11136.1.S1_at (Zebrafish Array)   NM_213037_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000139680
Ensembl peptide - ENSDARP00000046780
NCBI entrez gene - 406310     See in Manteia.
RefSeq - NM_213037
RefSeq Peptide - NP_998202
swissprot - A0A0R4ISP6
swissprot - Q6PC78
ZFIN ID - ZDB-GENE-040426-1977
Ensembl - ENSDARG00000032997
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q5ZIR9ENSGALG00000006960Gallus gallus
 Q91YT2ENSMUSG00000020448Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RNF5 / ring finger protein 5 / Q99942*ENSDARG0000007560655


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0030433 ubiquitin-dependent ERAD pathway IEA
 biological_processGO:0071712 ER-associated misfolded protein catabolic process IBA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005741 mitochondrial outer membrane IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0036513 Derlin-1 retrotranslocation complex IBA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0044390 ubiquitin-like protein conjugating enzyme binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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