ENSDARG00000035821


Danio rerio

Features
Gene ID: ENSDARG00000035821
  
Biological name :si:ch211-173p18.3
  
Synonyms : si:ch211-173p18.3
  
Possible biological names infered from orthology : A2A791 / AC114490.2 / O95789 / Q5VZL5 / zinc finger, MYM-type 4 / zinc finger, MYM-type 6 / zinc finger MYM-type containing 4 / zinc finger MYM-type containing 6 / ZMYM4 / ZMYM6
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 40115977
Gene end: 40165799
  
Corresponding Affymetrix probe sets: Dr.11987.1.A1_at (Zebrafish Array)   Dr.23150.1.A1_at (Zebrafish Array)   Dr.26089.2.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000049967
Ensembl peptide - ENSDARP00000113987
Ensembl peptide - ENSDARP00000123193
Ensembl peptide - ENSDARP00000125960
NCBI entrez gene - 553317     See in Manteia.
RefSeq - XM_005159706
swissprot - F1R3K9
swissprot - F6NVC8
swissprot - F6P1T9
swissprot - I3ISR9
ZFIN ID - ZDB-GENE-060503-672
Ensembl - ENSDARG00000035821
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000002499Gallus gallus
 AC114490.2ENSG00000271741Homo sapiens
 ZMYM4ENSG00000146463Homo sapiens
 ZMYM6ENSG00000163867Homo sapiens
 Zmym4ENSMUSG00000042446Mus musculus
 Zmym6ENSMUSG00000042408Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zmym4 / zinc finger, MYM-type 4 / ZMYM6* / A2A791* / Q5VZL5* / O95789* / AC114490.2* / zinc finger, MYM-type 6* / zinc finger MYM-type containing 4* / zinc finger MYM-type containing 6*ENSDARG0000003582360
si:ch211-266o15.1 / ZMYM4* / ZMYM6* / A2A791* / O95789* / Q5VZL5* / AC114490.2* / zinc finger, MYM-type 6* / zinc finger, MYM-type 4* / zinc finger MYM-type containing 4* / zinc finger MYM-...ENSDARG0000005768131
zmym2 / zinc finger, MYM-type 2 / ZMYM5* / Q9UJ78* / Q9CU65* / Q9UBW7* / Q3U2E2* / zinc finger, MYM-type 5* / zinc finger MYM-type containing 5* / zinc finger MYM-type containing 2*ENSDARG0000002735327
qrich1 / glutamine-rich 1 / Q2TAL8*ENSDARG0000001979712


Protein motifs (from Interpro)
Interpro ID Name
 IPR006612  THAP-type zinc finger
 IPR010507  Zinc finger, MYM-type
 IPR011017  TRASH domain
 IPR021893  Protein of unknown function DUF3504


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0007010 cytoskeleton organization IBA
 biological_processGO:0007275 multicellular organism development IBA
 biological_processGO:0022604 regulation of cell morphogenesis IBA
 cellular_componentGO:0005654 nucleoplasm IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IBA
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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