ENSDARG00000036645


Danio rerio

Features
Gene ID: ENSDARG00000036645
  
Biological name :rcbtb1
  
Synonyms : rcbtb1 / regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
  
Possible biological names infered from orthology : Q8NDN9 / RCC1 and BTB domain containing protein 1
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 46635236
Gene end: 46650041
  
Corresponding Affymetrix probe sets: Dr.5968.1.S1_at (Zebrafish Array)   NM_199991_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000124696
Ensembl peptide - ENSDARP00000053221
Ensembl peptide - ENSDARP00000148223
NCBI entrez gene - 336007     See in Manteia.
RefSeq - NM_199991
RefSeq - XM_005170970
RefSeq Peptide - NP_956285
swissprot - F8W2K5
swissprot - B8A4R1
ZFIN ID - ZDB-GENE-030131-7951
Ensembl - ENSDARG00000036645
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RCBTB1ENSGALG00000017008Gallus gallus
 Q8NDN9ENSG00000136144Homo sapiens
 Rcbtb1ENSMUSG00000035469Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rcbtb2 / regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 / O95199* / RCC1 and BTB domain containing protein 2*ENSDARG0000009068773
rpgra / retinitis pigmentosa GTPase regulator a / RPGR* / Q92834* / retinitis pigmentosa GTPase regulator*ENSDARG0000005661723
rpgrb / retinitis pigmentosa GTPase regulator b / RPGR* / Q92834* / retinitis pigmentosa GTPase regulator*ENSDARG0000005707422
rcc2 / Q6NYE2 / regulator of chromosome condensation 2 / Q8BK67* / Q9P258* / Protein RCC2 *ENSDARG0000001151018
rcc1 / regulator of chromosome condensation 1 / P18754* / Q8VE37*ENSDARG0000003715816
rcc1l / RCC1 like / Q96I51* / Q9CYF5* / reculator of chromosome condensation 1 like*ENSDARG0000005958315
sergef / secretion regulating guanine nucleotide exchange factor / Q80YD6* / Q9UGK8*ENSDARG0000007098615


Protein motifs (from Interpro)
Interpro ID Name
 IPR000210  BTB/POZ domain
 IPR000408  Regulator of chromosome condensation, RCC1
 IPR009091  Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
 IPR011333  SKP1/BTB/POZ domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001568 blood vessel development IMP
 biological_processGO:0061298 retina vasculature development in camera-type eye IGI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye vasculature development disrupted , abnormal
Show

 ZFA:0001285 intersegmental vessel intersegmental vessel morphology , abnormal
intersegmental vessel decreased thickness , abnormal
intersegmental vessel truncated , abnormal
Show

 ZFA:0007057 ocular blood vessel ocular blood vessel morphology , abnormal
ocular blood vessel decreased area , abnormal
ocular blood vessel decreased thickness , abnormal
ocular blood vessel blood vessel lumenization disrupted , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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