ENSDARG00000056617


Danio rerio

Features
Gene ID: ENSDARG00000056617
  
Biological name :rpgra
  
Synonyms : retinitis pigmentosa GTPase regulator a / rpgra
  
Possible biological names infered from orthology : Q92834 / retinitis pigmentosa GTPase regulator / RPGR
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 30274637
Gene end: 30288446
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000073550
Ensembl peptide - ENSDARP00000117753
NCBI entrez gene - 571327     See in Manteia.
RefSeq - XM_021478789
swissprot - F1QV77
swissprot - F1QYU9
ZFIN ID - ZDB-GENE-070912-423
Ensembl - ENSDARG00000056617
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPGRENSGALG00000036284Gallus gallus
 RPGRENSG00000156313Homo sapiens
 RpgrENSMUSG00000031174Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rpgrb / retinitis pigmentosa GTPase regulator b / RPGR* / Q92834* / retinitis pigmentosa GTPase regulator*ENSDARG0000005707425
rcbtb1 / regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 / Q8NDN9* / RCC1 and BTB domain containing protein 1*ENSDARG000000366457
rcbtb2 / regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 / O95199* / RCC1 and BTB domain containing protein 2*ENSDARG000000906877
rcc2 / Q6NYE2 / regulator of chromosome condensation 2 / Q8BK67* / Q9P258* / Protein RCC2 *ENSDARG000000115106
rcc1 / regulator of chromosome condensation 1 / P18754* / Q8VE37*ENSDARG000000371586
rcc1l / RCC1 like / Q96I51* / Q9CYF5* / reculator of chromosome condensation 1 like*ENSDARG000000595836
sergef / secretion regulating guanine nucleotide exchange factor / Q80YD6* / Q9UGK8*ENSDARG000000709866


Protein motifs (from Interpro)
Interpro ID Name
 IPR000408  Regulator of chromosome condensation, RCC1
 IPR009091  Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0072001 renal system development IMP


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain hydrocephalic , abnormal
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 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary decreased thickness , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000163 renal system renal system cystic , abnormal
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 ZFA:0001094 whole organism whole organism anterior-posterior axis decreased length , abnormal
whole organism anterior-posterior axis increased curvature , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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