ENSDARG00000036778


Danio rerio

Features
Gene ID: ENSDARG00000036778
  
Biological name :hbs1l
  
Synonyms : hbs1l / HBS1-like translational GTPase
  
Possible biological names infered from orthology : HBS1-like protein / Q69ZS7 / Q9Y450
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 31764061
Gene end: 31810391
  
Corresponding Affymetrix probe sets: Dr.9050.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000149206
Ensembl peptide - ENSDARP00000154221
Ensembl peptide - ENSDARP00000118572
Ensembl peptide - ENSDARP00000118896
NCBI entrez gene - 324267     See in Manteia.
swissprot - E9QHS3
swissprot - F1Q5Z6
ZFIN ID - ZDB-GENE-030131-2987
Ensembl - ENSDARG00000036778
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HBS1LENSGALG00000013962Gallus gallus
 HBS1LENSG00000112339Homo sapiens
 Hbs1lENSMUSG00000019977Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
gspt1 / G1 to S phase transition 1 / GSPT2* / P15170* / Q149F3* / Q8IYD1* / Q8R050* / G1 to S phase transition 2*ENSDARG0000003104828
gspt1l / G1 to S phase transition 1, like / GSPT1* / GSPT2* / P15170* / Q149F3* / Q8IYD1* / Q8R050* / G1 to S phase transition 1* / G1 to S phase transition 2*ENSDARG0000009862727


Protein motifs (from Interpro)
Interpro ID Name
 IPR000795  Transcription factor, GTP-binding domain
 IPR004160  Translation elongation factor EFTu/EF1A, C-terminal
 IPR004161  Translation elongation factor EFTu-like, domain 2
 IPR009000  Translation protein, beta-barrel domain superfamily
 IPR009001  Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal
 IPR015033  HBS1-like protein, N-terminal
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IBA
 cellular_componentGO:0005622 intracellular IBA
 molecular_functionGO:0003924 GTPase activity IBA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
mRNA decay by 3 to 5 exoribonuclease


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000062206 skiv2l / SKI2 homolog, superkiller viralicidic activity 2-like / Q15477* / Ski2 like RNA helicase* / superkiller viralicidic activity 2-like (S. cerevisiae)*  / complex






 

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