ENSDARG00000036831


Danio rerio

Features
Gene ID: ENSDARG00000036831
  
Biological name :rnf41
  
Synonyms : ring finger protein 41 / rnf41
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase NRDP1 / Q8BH75 / Q9H4P4
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 32308814
Gene end: 32334208
  
Corresponding Affymetrix probe sets: Dr.11667.1.S1_at (Zebrafish Array)   NM_213516_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000053471
NCBI entrez gene - 406837     See in Manteia.
RefSeq - NM_213516
RefSeq Peptide - NP_998681
swissprot - F1QIM8
ZFIN ID - ZDB-GENE-040426-2920
Ensembl - ENSDARG00000036831
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RNF41ENSGALG00000032819Gallus gallus
 RNF41ENSG00000181852Homo sapiens
 Rnf41ENSMUSG00000025373Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rnf41l / ring finger protein 41, likeENSDARG0000007391824
rnf151 / ring finger protein 151 / Q2KHN1* / Q9CQ29*ENSDARG0000007504616


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR008974  TRAF-like
 IPR013010  Zinc finger, SIAH-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR015036  E3 ubiquitin-protein ligase NRDP1
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IEA


Pathways (from Reactome)
Pathway description
Downregulation of ERBB2:ERBB3 signaling
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0009090 pigment cell pigment cell spatial pattern , abnormal
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 ZFA:0009091 melanocyte melanocyte decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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