ENSDARG00000036929


Danio rerio
zincrnf139fingerproteinmembraneionbindingring-typering-ch-typeringfyvephd-typetrcn-terminaldomainpolyubiquitinationproteasome-mediatedubiquitin-dependentcatabolicprocessendoplasmicreticulumintegralcomponentmetalubiquitinligaseactivityerqualitycontrol

Features
Gene ID: ENSDARG00000036929
  
Biological name :rnf139
  
Synonyms : ring finger protein 139 / rnf139
  
Possible biological names infered from orthology : Q8WU17
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 170705
Gene end: 175977
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000053621
NCBI entrez gene - 100144552     See in Manteia.
RefSeq - NM_001123048
RefSeq Peptide - NP_001116520
swissprot - B1H1M0
ZFIN ID - ZDB-GENE-080401-4
Ensembl - ENSDARG00000036929
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RNF139ENSGALG00000032734Gallus gallus
 Q8WU17ENSG00000170881Homo sapiens
 Rnf139ENSMUSG00000037075Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zmp:0000000662ENSDARG0000005682926
rnf145b / ring finger protein 145b / Q5SWK7* / Q96MT1* / RNF145* / ring finger protein 145*ENSDARG0000003237324
rnf145a / ring finger protein 145a / Q5SWK7* / Q96MT1* / RNF145* / ring finger protein 145*ENSDARG0000000260923
amfra / autocrine motility factor receptor a / AMFR* / Q9UKV5* / Q9R049* / E3 ubiquitin-protein ligase AMFR * / autocrine motility factor receptor*ENSDARG0000002021812
syvn1 / synovial apoptosis inhibitor 1, synoviolin / Q86TM6* / synoviolin 1*ENSDARG0000001784211
amfrb / autocrine motility factor receptor b / AMFR* / Q9UKV5* / Q9R049* / E3 ubiquitin-protein ligase AMFR * / autocrine motility factor receptor*ENSDARG000001055789


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR011016  Zinc finger, RING-CH-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR025754  TRC8 N-terminal domain


Gene Ontology (GO)
nitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic nitrogen compound metabolic processcellular metabolic processcellular metabolic processprimary metabolic processprimary metabolic processorganic substance metabolic organic substance metabolic processcatabolic processcatabolic process
ion bindingcatalytic activity, acting on a proteintransferase activityion bindingcatalytic activity, acting on a proteintransferase activityion bindingcatalytic activity, acting on a proteintransferase activityion bindingcatalytic activity, acting on a proteintransferase activityion bindingcatalytic activity, acting on a proteintransferase activityion bindingcatalytic activity, acting on a proteintransferase activityion bindingcatalytic activity, acting on a proteintransferase activityion bindingcatalytic activity, acting on a proteintransferase activityion bindingcatalytic activity, acting on a proteintransferase activityion bindingcatalytic activity, acting on a proteintransferase activityion bindingion bindingcatalytic activity, acting on a proteincatalytic activity, acting on a proteintransferase activitytransferase activity
cellorganellemembranecellorganellemembranecellorganellemembranecellorganellemembranecellorganellemembranecellorganellemembranecellorganellemembranecellorganellemembranecellorganellemembranecellorganellemembranecellcellorganelleorganellemembranemembrane
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IBA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IBA
 cellular_componentGO:0005783 endoplasmic reticulum IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
ER Quality Control Compartment (ERQC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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