ENSDARG00000037017


Danio rerio

Features
Gene ID: ENSDARG00000037017
  
Biological name :ube4b
  
Synonyms : ube4b / ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)
  
Possible biological names infered from orthology : O95155 / Q9ES00 / ubiquitination factor E4B
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 29507315
Gene end: 29553691
  
Corresponding Affymetrix probe sets: Dr.12066.1.S1_at (Zebrafish Array)   Dr.1219.1.A1_at (Zebrafish Array)   NM_194362_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000053803
Ensembl peptide - ENSDARP00000140193
Ensembl peptide - ENSDARP00000105688
NCBI entrez gene - 170784     See in Manteia.
RefSeq - NM_194362
RefSeq Peptide - NP_919343
swissprot - E7FEA3
swissprot - A0A0R4IUP8
swissprot - F1Q5A9
ZFIN ID - ZDB-GENE-020205-1
Ensembl - ENSDARG00000037017
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 UBE4BENSGALG00000002649Gallus gallus
 UBE4BENSG00000130939Homo sapiens
 Ube4bENSMUSG00000028960Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ube4a / ubiquitination factor E4A (UFD2 homolog, yeast) / E9Q735* / Q14139* / ubiquitination factor E4A*ENSDARG0000004057121


Protein motifs (from Interpro)
Interpro ID Name
 IPR003613  U box domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019474  Ubiquitin conjugation factor E4, core


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IBA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0030433 ubiquitin-dependent ERAD pathway IBA
 cellular_componentGO:0000151 ubiquitin ligase complex IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0034450 ubiquitin-ubiquitin ligase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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