ENSDARG00000038113


Danio rerio

Features
Gene ID: ENSDARG00000038113
  
Biological name :rprd1b
  
Synonyms : regulation of nuclear pre-mRNA domain containing 1B / rprd1b
  
Possible biological names infered from orthology : Q9CSU0 / Q9NQG5 / Regulation of nuclear pre-mRNA domain-containing protein 1B
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 43405205
Gene end: 43454523
  
Corresponding Affymetrix probe sets: Dr.5380.1.S1_at (Zebrafish Array)   NM_199556_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000150790
Ensembl peptide - ENSDARP00000055563
Ensembl peptide - ENSDARP00000123117
NCBI entrez gene - 321636     See in Manteia.
RefSeq - XM_005162422
RefSeq - XM_005162423
RefSeq - NM_199556
RefSeq - XM_005162418
RefSeq Peptide - NP_955850
swissprot - Q7ZUK9
swissprot - E9QD85
ZFIN ID - ZDB-GENE-030131-355
Ensembl - ENSDARG00000038113
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPRD1BENSGALG00000006788Gallus gallus
 Q9NQG5ENSG00000101413Homo sapiens
 Q9CSU0ENSMUSG00000027651Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rprd1a / regulation of nuclear pre-mRNA domain containing 1A / Q8VDS4* / Q96P16* / Regulation of nuclear pre-mRNA domain-containing protein 1A *ENSDARG0000010486156
rprd2a / regulation of nuclear pre-mRNA domain containing 2a / RPRD2* / Q5VT52* / Q6NXI6* / regulation of nuclear pre-mRNA domain containing 2*ENSDARG0000005808923
rprd2b / regulation of nuclear pre-mRNA domain containing 2b / RPRD2* / Q5VT52* / regulation of nuclear pre-mRNA domain containing 2*ENSDARG0000007467619


Protein motifs (from Interpro)
Interpro ID Name
 IPR006569  CID domain
 IPR006903  RNA polymerase II-binding domain
 IPR008942  ENTH/VHS
 IPR032337  Cell-cycle alteration and expression-elevated protein in tumour


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye decreased size , abnormal
eye decreased width , abnormal
Show

 ZFA:0000112 gut gut quality , abnormal
gut hypoplastic , abnormal
Show

 ZFA:0000123 liver liver quality , abnormal
liver hypoplastic , abnormal
Show

 ZFA:0001114 head head decreased width , abnormal
Show

 ZFA:0001439 anatomical system anatomical system quality , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000038113 rprd1b / regulation of nuclear pre-mRNA domain containing 1B / Q9CSU0* / Q9NQG5* / Regulation of nuclear pre-mRNA domain-containing protein 1B *  / complex
 ENSDARG00000038397 rpap2 / B0UYH6 / RNA polymerase II associated protein 2 / Q8IXW5* / Q8VC34* / Putative RNA polymerase II subunit B1 CTD phosphatase Rpap2 *  / complex / reaction






 

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