ENSDARG00000038312


Danio rerio

Features
Gene ID: ENSDARG00000038312
  
Biological name :rcl1
  
Synonyms : rcl1 / RNA terminal phosphate cyclase-like 1
  
Possible biological names infered from orthology : Q9JJT0 / Q9Y2P8 / RNA 3-terminal phosphate cyclase-like protein
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 1833741
Gene end: 1869982
  
Corresponding Affymetrix probe sets: Dr.6949.1.A1_at (Zebrafish Array)   Dr.6949.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000055877
swissprot - F1RAI8
ZFIN ID - ZDB-GENE-040930-11
Ensembl - ENSDARG00000038312
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RCL1ENSGALG00000015024Gallus gallus
 RCL1ENSG00000120158Homo sapiens
 Rcl1ENSMUSG00000024785Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rtca / RNA 3-terminal phosphate cyclase / O00442*ENSDARG0000000221523


Protein motifs (from Interpro)
Interpro ID Name
 IPR000228  RNA 3"-terminal phosphate cyclase
 IPR013791  RNA 3"-terminal phosphate cyclase, insert domain
 IPR013792  RNA 3"-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta
 IPR016443  RNA 3"-terminal phosphate cyclase type 2
 IPR020719  RNA 3"-terminal phosphate cyclase-like, conserved site
 IPR023797  RNA 3"-terminal phosphate cyclase domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004521 endoribonuclease activity IBA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000112 gut gut hypoplastic , abnormal
gut quality , abnormal
Show

 ZFA:0000114 heart heart quality , abnormal
Show

 ZFA:0000123 liver liver hypoplastic , abnormal
liver quality , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr