ENSDARG00000040178


Danio rerio

Features
Gene ID: ENSDARG00000040178
  
Biological name :havcr1
  
Synonyms : havcr1 / hepatitis A virus cellular receptor 1
  
Possible biological names infered from orthology : Q6U7R4 / Q96H15 / T cell immunoglobulin and mucin domain containing 4 / T-cell immunoglobulin and mucin domain-containing protein 4 / TIMD4
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 29100972
Gene end: 29110607
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000119490
Ensembl peptide - ENSDARP00000154233
Ensembl peptide - ENSDARP00000120530
Ensembl peptide - ENSDARP00000058773
Ensembl peptide - ENSDARP00000113226
NCBI entrez gene - 436707     See in Manteia.
RefSeq - NM_001002434
RefSeq Peptide - NP_001002434
swissprot - E9QEV2
swissprot - F1QLX9
swissprot - E9QGJ4
swissprot - Q6DH50
ZFIN ID - ZDB-GENE-040718-131
Ensembl - ENSDARG00000040178
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TIMD4ENSGALG00000003876Gallus gallus
 TIMD4ENSG00000145850Homo sapiens
 Timd4ENSMUSG00000055546Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
timd4 / T cell immunoglobulin and mucin domain containing 4 / Timd2* / Q8TDQ0* / HAVCR1* / HAVCR2* / Q8VIM0* / Q96D42* / Gm12169* / BC053393* / cDNA sequence BC053393* / hepatitis A virus c...ENSDARG0000007725721
havcr2 / hepatitis A virus cellular receptor 2 / TIMD4* / Q96H15* / Q6U7R4* / T cell immunoglobulin and mucin domain containing 4* / T-cell immunoglobulin and mucin domain-containing protein 4 *ENSDARG0000009169218


Protein motifs (from Interpro)
Interpro ID Name
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013106  Immunoglobulin V-set domain
 IPR013783  Immunoglobulin-like fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0043277 apoptotic cell clearance IMP
 biological_processGO:0043652 engulfment of apoptotic cell IMP
 biological_processGO:0060097 cytoskeletal rearrangement involved in phagocytosis, engulfment IMP
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain apoptotic cell clearance decreased occurrence , abnormal
brain apoptotic cell clearance process quality , abnormal
brain apoptotic cell clearance decreased efficacy , abnormal
brain engulfment of apoptotic cell process quality , abnormal
brain recognition of apoptotic cell increased duration , abnormal
brain phagolysosome assembly involved in apoptotic cell clearance process quality , abnormal
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 ZFA:0009077 microglial cell microglial cell actin cytoskeleton decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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