ENSDARG00000040971


Danio rerio

Features
Gene ID: ENSDARG00000040971
  
Biological name :zgc:92606
  
Synonyms : zgc:92606
  
Possible biological names infered from orthology : GABARAPL1 / GABA type A receptor associated protein like 1 / Gamma-aminobutyric acid receptor-associated protein-like 1 / Q8R3R8 / Q9H0R8
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 12265158
Gene end: 12276225
  
Corresponding Affymetrix probe sets: Dr.6460.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000060036
Ensembl peptide - ENSDARP00000116923
NCBI entrez gene - 100000242     See in Manteia.
RefSeq - NM_001002707
RefSeq Peptide - NP_001002707
swissprot - Q6DH82
ZFIN ID - ZDB-GENE-040718-462
Ensembl - ENSDARG00000040971
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GABARAPL1ENSGALG00000014723Gallus gallus
 Q9H0R8ENSG00000139112Homo sapiens
 Q8R3R8ENSMUSG00000030161Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
gabarapb / GABA(A) receptor-associated protein bENSDARG0000005208260
gabarapa / GABA(A) receptor-associated protein a / Q9DCD6* / O95166* / GABARAP* / GABA type A receptor-associated protein* / Gamma-aminobutyric acid receptor-associated protein *ENSDARG0000003555759
gabarapl2 / GABA(A) receptor-associated protein like 2 / P60520* / P60521* / GABA type A receptor associated protein like 2* / Gamma-aminobutyric acid receptor-associated protein-like 2 *ENSDARG0000002720041
map1lc3c / microtubule-associated protein 1 light chain 3 gamma / Q9BXW4*ENSDARG0000010052837
map1lc3a / microtubule-associated protein 1 light chain 3 alpha / Q91VR7* / Q9H492* / Microtubule-associated proteins 1A/1B light chain 3A *ENSDARG0000003360936
map1lc3cl / microtubule-associated protein 1 light chain 3 gamma, likeENSDARG0000007572735
map1lc3b / microtubule-associated protein 1 light chain 3 beta / Q9GZQ8* / Q9CQV6* / A6NCE7* / MAP1LC3B2* / Microtubule-associated proteins 1A/1B light chain 3B * / microtubule associated p...ENSDARG0000010112735


Protein motifs (from Interpro)
Interpro ID Name
 IPR004241  Autophagy protein Atg8 ubiquitin-like
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000045 autophagosome assembly IBA
 biological_processGO:0000422 autophagy of mitochondrion IBA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0006995 cellular response to nitrogen starvation IBA
 cellular_componentGO:0000421 autophagosome membrane IBA
 cellular_componentGO:0005829 cytosol IBA


Pathways (from Reactome)
Pathway description
Macroautophagy


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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