ENSDARG00000041215


Danio rerio

Features
Gene ID: ENSDARG00000041215
  
Biological name :cetn4
  
Synonyms : centrin 4 / cetn4
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 1348065
Gene end: 1355544
  
Corresponding Affymetrix probe sets: Dr.16367.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000060416
NCBI entrez gene - 795310     See in Manteia.
swissprot - F1R789
ZFIN ID - ZDB-GENE-030826-21
Ensembl - ENSDARG00000041215
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CETN1ENSGALG00000026741Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cetn2 / centrin, EF-hand protein, 2 / CETN1* / Q9R1K9* / P41209* / Q12798* / P41208* / centrin 2* / centrin 1*ENSDARG0000010151081
cetn3 / centrin 3 / O15182* / O35648*ENSDARG0000001182555
efcab2 / EF-hand calcium binding domain 2 / Q5VUJ9* / Q9CQ46* / EF-hand calcium-binding domain-containing protein 2 *ENSDARG0000007432327


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000226 microtubule cytoskeleton organization IMP
 biological_processGO:0022027 interkinetic nuclear migration IMP
 biological_processGO:0060271 cilium assembly IMP
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain hydrocephalic , abnormal
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 ZFA:0000047 peripheral olfactory organ peripheral olfactory organ centriole physical object quality , abnormal
peripheral olfactory organ motile cilium decreased length , abnormal
peripheral olfactory organ motile cilium decreased mobility , abnormal
peripheral olfactory organ ciliary basal body physical object quality , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000150 pronephric duct pronephric duct disorganized , abnormal
pronephric duct increased diameter , abnormal
pronephric duct motile cilium decreased length , abnormal
pronephric duct motile cilium uncoordinated , abnormal
pronephric duct motile cilium decreased amount , abnormal
pronephric duct motile cilium decreased mobility , abnormal
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 ZFA:0000151 pronephros pronephros cystic , abnormal
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 ZFA:0001071 presumptive neural retina presumptive neural retina decreased thickness , abnormal
presumptive neural retina microtubule cytoskeleton disorganized , abnormal
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 ZFA:0001117 post-vent region post-vent region increased curvature , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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