ENSDARG00000042489


Danio rerio

Features
Gene ID: ENSDARG00000042489
  
Biological name :thap12a
  
Synonyms : thap12a / THAP domain containing 12a
  
Possible biological names infered from orthology : O43422 / Q9CUX1 / THAP12 / THAP domain containing 12
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 32058692
Gene end: 32064405
  
Corresponding Affymetrix probe sets: Dr.2925.1.S1_at (Zebrafish Array)   NM_213081_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000062308
NCBI entrez gene - 406354     See in Manteia.
RefSeq - NM_213081
RefSeq Peptide - NP_998246
swissprot - F1QHH2
ZFIN ID - ZDB-GENE-040426-2045
Ensembl - ENSDARG00000042489
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 THAP12ENSGALG00000000838Gallus gallus
 O43422ENSG00000137492Homo sapiens
 Q9CUX1ENSMUSG00000030753Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
thap12b / THAP domain containing 12b / THAP12* / O43422* / Q9CUX1* / THAP domain containing 12*ENSDARG0000002096455
si:dkey-250d21.1ENSDARG000000424921


Protein motifs (from Interpro)
Interpro ID Name
 IPR006612  THAP-type zinc finger
 IPR025398  Domain of unknown function DUF4371


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005654 nucleoplasm IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr