ENSDARG00000042566


Danio rerio

Features
Gene ID: ENSDARG00000042566
  
Biological name :rps7
  
Synonyms : P62084 / ribosomal protein S7 / rps7
  
Possible biological names infered from orthology : Gm9493 / P62081 / P62082
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 30372352
Gene end: 30377221
  
Corresponding Affymetrix probe sets: Dr.18282.2.S1_at (Zebrafish Array)   NM_200752_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000109497
Ensembl peptide - ENSDARP00000150273
NCBI entrez gene - 393725     See in Manteia.
RefSeq - NM_200752
RefSeq Peptide - NP_957046
swissprot - P62084
ZFIN ID - ZDB-GENE-040426-1718
Ensembl - ENSDARG00000042566
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPS7ENSGALG00000016392Gallus gallus
 RPS7ENSG00000171863Homo sapiens
 Gm9493ENSMUSG00000044424Mus musculus
 Rps7ENSMUSG00000061477Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000554  Ribosomal protein S7e


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002181 cytoplasmic translation IBA
 biological_processGO:0006364 rRNA processing IBA
 biological_processGO:0006412 translation IEA
 biological_processGO:0030097 hemopoiesis IMP
 biological_processGO:0042274 ribosomal small subunit biogenesis IBA
 biological_processGO:0043009 chordate embryonic development IMP
 biological_processGO:0051726 regulation of cell cycle IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IBA
 cellular_componentGO:0030686 90S preribosome IBA
 cellular_componentGO:0032040 small-subunit processome IBA
 molecular_functionGO:0003735 structural constituent of ribosome IEA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain apoptotic process increased process quality , abnormal
brain cell death increased process quality , abnormal
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 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000029 hindbrain hindbrain inflated , abnormal
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 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary condensed , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000084 yolk yolk circular , abnormal
yolk grey , abnormal
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 ZFA:0000106 extension extension decreased thickness , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle edematous , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
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 ZFA:0000114 heart heart edematous , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
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 ZFA:0000142 peripheral nervous system peripheral nervous system chromosome amount , abnormal
peripheral nervous system nerve neoplastic , abnormal
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 ZFA:0001058 caudal fin caudal fin apoptotic process increased process quality , abnormal
caudal fin cell death increased process quality , abnormal
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 ZFA:0001094 whole organism whole organism decreased length , abnormal
whole organism anterior region necrotic , abnormal
whole organism quality , abnormal
whole organism decreased size , abnormal
whole organism semi-viable , abnormal
whole organism has fewer parts of type nucleate erythrocyte , abnormal
whole organism mitochondrion morphology , abnormal
whole organism Golgi apparatus morphology , abnormal
whole organism autophagy increased occurrence , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001115 trunk trunk decreased length , abnormal
trunk decreased thickness , abnormal
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 ZFA:0001117 post-vent region post-vent region curved ventral , abnormal
post-vent region curled , abnormal
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 ZFA:0009044 blood cell blood cell hemoglobin complex decreased amount , abnormal
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 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte has extra parts of type nucleate erythrocyte autophagosome, abnormal
nucleate erythrocyte has extra parts of type nucleate erythrocyte autolysosome, abnormal
nucleate erythrocyte autophagy increased occurrence , abnormal
nucleate erythrocyte decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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