ENSGALG00000016392


Gallus gallus
ribosomalscomplexRPS7translationsubunitformationproteinrrnaprocessingsmallribosomenonsensemediateddecaynmdexonjunctionejcecytoplasmicbiogenesisintracellularcytosolicpreribosomesmall-subunitprocessomestructuralconstituentsrp-dependentcotranslational

Features
Gene ID: ENSGALG00000016392
  
Biological name :RPS7
  
Synonyms : ribosomal protein S7 / RPS7
  
Possible biological names infered from orthology : Gm9493 / P62081 / P62082
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 94094085
Gene end: 94102761
  
Corresponding Affymetrix probe sets: Gga.17439.1.S1_at (Chicken Array)   Gga.4686.1.S1_a_at (Chicken Array)   Gga.4686.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000060688
Ensembl peptide - ENSGALP00000063432
Ensembl peptide - ENSGALP00000026392
Ensembl peptide - ENSGALP00000051477
Ensembl peptide - ENSGALP00000059115
NCBI entrez gene - 421919     See in Manteia.
RefSeq - XM_001234708
RefSeq - XM_004940515
swissprot - A0A1D5PFB4
swissprot - F1NN16
Ensembl - ENSGALG00000016392
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rps7ENSDARG00000042566Danio rerio
 RPS7ENSG00000171863Homo sapiens
 Gm9493ENSMUSG00000044424Mus musculus
 Rps7ENSMUSG00000061477Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000554  Ribosomal protein S7e


Gene Ontology (GO)
nitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisnitrogen compound metabnitrogen compound metabolic processbiosynthetic processbiosynthetic processcellular metabolic proccellular metabolic processprimary metabolic proceprimary metabolic processorganic substance metaborganic substance metabolic processcellular component biogcellular component biogenesis
structural constituent of ribosomestructural constituent of ribosomestructural constituent of ribosomestructural constituent of ribosomestructural constituent of ribosomestructural constituent of ribosomestructural constituent of ribosomestructural constituent of ribosomestructural constituent of ribosomestructural constituent of ribosomestructural constituent of ribosomestructural constituent of ribosome
cellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellcellprotein-containing complexprotein-containing complexorganelleorganelle
TypeGO IDTermEv.Code
 biological_processGO:0002181 cytoplasmic translation IBA
 biological_processGO:0006364 rRNA processing IBA
 biological_processGO:0006412 translation IEA
 biological_processGO:0042274 ribosomal small subunit biogenesis IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IBA
 cellular_componentGO:0030686 90S preribosome IBA
 cellular_componentGO:0032040 small-subunit processome IBA
 molecular_functionGO:0003735 structural constituent of ribosome IEA


Pathways (from Reactome)
Pathway description
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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