ENSDARG00000042780


Danio rerio

Features
Gene ID: ENSDARG00000042780
  
Biological name :apoba
  
Synonyms : apoba / apolipoprotein Ba
  
Possible biological names infered from orthology : APOB / apolipoprotein B / Apolipoprotein B-100 Apolipoprotein B-48 / E9Q414 / P04114
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 30704068
Gene end: 30727966
  
Corresponding Affymetrix probe sets: Dr.21929.1.A1_at (Zebrafish Array)   Dr.4002.1.A1_at (Zebrafish Array)   XM_689735_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000062792
NCBI entrez gene - 566465     See in Manteia.
RefSeq - XM_689735
swissprot - E7FBD3
ZFIN ID - ZDB-GENE-070702-4
Ensembl - ENSDARG00000042780
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 APOBENSGALG00000016491Gallus gallus
 APOBENSG00000084674Homo sapiens
 ApobENSMUSG00000020609Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
apobb.1 / apolipoprotein Bb, tandem duplicate 1 / APOB* / E9Q414* / P04114* / apolipoprotein B* / Apolipoprotein B-100 Apolipoprotein B-48*ENSDARG0000002276730
apobb.2 / apolipoprotein Bb, tandem duplicate 2 / APOB* / E9Q414* / P04114* / apolipoprotein B* / Apolipoprotein B-100 Apolipoprotein B-48*ENSDARG0000007501619


Protein motifs (from Interpro)
Interpro ID Name
 IPR001747  Lipid transport protein, N-terminal
 IPR009454  Lipid transport, open beta-sheet
 IPR011030  Lipovitellin-phosvitin complex, superhelical domain
 IPR015255  Vitellinogen, open beta-sheet
 IPR015816  Vitellinogen, beta-sheet N-terminal
 IPR015817  Vitellinogen, open beta-sheet, subdomain 1
 IPR015819  Lipid transport protein, beta-sheet shell


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006869 lipid transport IEA
 molecular_functionGO:0005319 lipid transporter activity IEA


Pathways (from Reactome)
Pathway description
Scavenging by Class B Receptors
Scavenging by Class A Receptors
Scavenging by Class H Receptors
Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
Platelet sensitization by LDL
Regulation of TLR by endogenous ligand
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis
VLDL assembly
Post-translational protein phosphorylation
Chylomicron assembly
Chylomicron remodeling
Chylomicron clearance
LDL clearance
LDL remodeling
Retinoid metabolism and transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0005035 subintestinal vein subintestinal vein morphology , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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