ENSDARG00000042826


Danio rerio

Features
Gene ID: ENSDARG00000042826
  
Biological name :egr2b
  
Synonyms : early growth response 2b / egr2b
  
Possible biological names infered from orthology : E3 SUMO-protein ligase EGR2 / early growth response 2 / EGR2 / P08152 / P11161
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 8483838
Gene end: 8504278
  
Corresponding Affymetrix probe sets: Dr.26.1.S1_at (Zebrafish Array)   NM_130997_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000116233
Ensembl peptide - ENSDARP00000062854
NCBI entrez gene - 30190     See in Manteia.
RefSeq - NM_130997
RefSeq Peptide - NP_571072
swissprot - E9QC39
swissprot - Q66HY5
ZFIN ID - ZDB-GENE-980526-283
Ensembl - ENSDARG00000042826
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 EGR2ENSGALG00000040971Gallus gallus
 EGR2ENSG00000122877Homo sapiens
 Egr2ENSMUSG00000037868Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
egr2a / early growth response 2a / EGR2* / P11161* / P08152* / early growth response 2* / E3 SUMO-protein ligase EGR2 *ENSDARG0000004409855
egr3 / early growth response 3 / P43300* / Q06889* / Mus musculus early growth response 3 (Egr3), transcript variant 3, mRNA.*ENSDARG0000008915645
egr1 / P26632 / early growth response 1 / P08046* / P18146* / Early growth response protein 1 *ENSDARG0000003742142
wt1a / wilms tumor 1a / WT1* / P19544* / Wilms tumor 1* / Wilms tumor 1 homolog*ENSDARG0000003142026
egr4 / early growth response 4 / Q05215* / Q9WUF2* / Early growth response protein 4 *ENSDARG0000007779926
wt1b / wilms tumor 1b / WT1* / P19544* / Wilms tumor 1* / Wilms tumor 1 homolog*ENSDARG0000000799025


Protein motifs (from Interpro)
Interpro ID Name
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR021849  Early growth response protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000029 hindbrain hindbrain deformed , abnormal
Show

 ZFA:0000175 posterior lateral line nerve posterior lateral line nerve myelin sheath morphology , abnormal
posterior lateral line nerve compact myelin absent , abnormal
Show

 ZFA:0000823 rhombomere 5 rhombomere 5 decreased area , abnormal
Show

 ZFA:0000948 rhombomere 3 rhombomere 3 decreased area , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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