ENSDARG00000042866


Danio rerio

Features
Gene ID: ENSDARG00000042866
  
Biological name :cx35.4
  
Synonyms : connexin 35.4 / cx35.4
  
Possible biological names infered from orthology : gap junction protein beta 3 / GJB3 / O75712 / P28231
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 24848976
Gene end: 24853918
  
Corresponding Affymetrix probe sets: Dr.4770.1.A1_at (Zebrafish Array)   NM_001017685_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000062916
Ensembl peptide - ENSDARP00000152015
NCBI entrez gene - 550380     See in Manteia.
RefSeq - NM_001017685
RefSeq Peptide - NP_001017685
swissprot - F1QBT8
ZFIN ID - ZDB-GENE-050417-174
Ensembl - ENSDARG00000042866
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GJB3ENSGALG00000028424Gallus gallus
 GJB3ENSG00000188910Homo sapiens
 Gjb3ENSMUSG00000042367Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cx34.4 / connexin 34.4 / GJB4* / GJB5* / Q9NTQ9* / O95377* / Q02738* / Q02739* / gap junction protein beta 4* / gap junction protein beta 5*ENSDARG0000007585450
cx28.6 / connexin 28.6ENSDARG0000000392545
cx30.9 / connexin 30.9ENSDARG0000007036243
cx30.3 / connexin 30.3 / GJB2* / GJB6* / Q00977* / O95452* / P29033* / P70689* / gap junction protein beta 2* / gap junction protein beta 6*ENSDARG0000004270740
cx28.8 / connexin 28.8 / GJB7* / Q6PEY0* / gap junction protein beta 7*ENSDARG0000007104239
cx27.5 / connexin 27.5 / GJB1* / P28230* / P08034* / gap junction protein beta 1*ENSDARG0000003555338
cx31.7 / connexin 31.7 / GJB1* / P28230* / P08034* / gap junction protein beta 1*ENSDARG0000005806438
GJD4 / gap junction protein delta 4 / Q96KN9*ENSDARG0000011689523


Protein motifs (from Interpro)
Interpro ID Name
 IPR000500  Connexin
 IPR002269  Gap junction beta-3 protein (Cx31)
 IPR013092  Connexin, N-terminal
 IPR017990  Connexin, conserved site
 IPR019570  Gap junction protein, cysteine-rich domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007154 cell communication IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005921 gap junction IEA
 cellular_componentGO:0005922 connexin complex IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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