ENSDARG00000043177


Danio rerio

Features
Gene ID: ENSDARG00000043177
  
Biological name :lsm1
  
Synonyms : lsm1 / LSM1, U6 small nuclear RNA associated
  
Possible biological names infered from orthology : LSM1 homolog, mRNA degradation associated / O15116 / Q8VC85 / U6 snRNA-associated Sm-like protein LSm1
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 44613135
Gene end: 44618213
  
Corresponding Affymetrix probe sets: Dr.14834.1.A1_at (Zebrafish Array)   NM_001003551_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000063391
NCBI entrez gene - 445157     See in Manteia.
RefSeq - NM_001003551
RefSeq Peptide - NP_001003551
swissprot - Q6DBW5
ZFIN ID - ZDB-GENE-040801-68
Ensembl - ENSDARG00000043177
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LSM1ENSGALG00000003245Gallus gallus
 LSM1ENSG00000175324Homo sapiens
 Lsm1ENSMUSG00000037296Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR034104  Sm-like protein Lsm1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IBA
 biological_processGO:0000956 nuclear-transcribed mRNA catabolic process IEA
 cellular_componentGO:0000932 P-body IBA
 cellular_componentGO:0005845 mRNA cap binding complex IBA
 cellular_componentGO:1990726 Lsm1-7-Pat1 complex IBA
 molecular_functionGO:0000339 RNA cap binding IBA


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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