ENSGALG00000003245


Gallus gallus

Features
Gene ID: ENSGALG00000003245
  
Biological name :LSM1
  
Synonyms : LSM1 / LSM1 homolog, mRNA degradation associated
  
Possible biological names infered from orthology : O15116 / Q8VC85 / U6 snRNA-associated Sm-like protein LSm1
  
Species: Gallus gallus
  
Chr. number: 22
Strand: -1
Band:
Gene start: 2293641
Gene end: 2294969
  
Corresponding Affymetrix probe sets: Gga.1218.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000005122
NCBI entrez gene - 426775     See in Manteia.
RefSeq - XM_424387
swissprot - E1C962
Ensembl - ENSGALG00000003245
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lsm1ENSDARG00000043177Danio rerio
 LSM1ENSG00000175324Homo sapiens
 Lsm1ENSMUSG00000037296Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IBA
 biological_processGO:0000956 nuclear-transcribed mRNA catabolic process IEA
 biological_processGO:0019827 stem cell population maintenance IEA
 biological_processGO:0045665 negative regulation of neuron differentiation IEA
 biological_processGO:0071044 histone mRNA catabolic process IEA
 cellular_componentGO:0000932 P-body IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005845 mRNA cap binding complex IBA
 cellular_componentGO:1990726 Lsm1-7-Pat1 complex IBA
 molecular_functionGO:0000339 RNA cap binding IBA


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr