ENSDARG00000043457


Danio rerio

Features
Gene ID: ENSDARG00000043457
  
Biological name :gapdh
  
Synonyms : gapdh / glyceraldehyde-3-phosphate dehydrogenase / Q5XJ10
  
Possible biological names infered from orthology : Gm10358 / Gm11214 / Gm12117 / Gm15294 / Gm3839 / P04406 / P16858
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 17189839
Gene end: 17200120
  
Corresponding Affymetrix probe sets: Dr.917.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000063799
Ensembl peptide - ENSDARP00000134592
Ensembl peptide - ENSDARP00000119951
Ensembl peptide - ENSDARP00000118517
Ensembl peptide - ENSDARP00000118100
NCBI entrez gene - 317743     See in Manteia.
RefSeq - NM_001115114
RefSeq Peptide - NP_001108586
swissprot - E9QCY9
swissprot - A0A0R4IGI1
swissprot - Q5XJ10
swissprot - E9QIH5
swissprot - E9QGA9
ZFIN ID - ZDB-GENE-030115-1
Ensembl - ENSDARG00000043457
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GAPDHENSGALG00000014442Gallus gallus
 GAPDHENSG00000111640Homo sapiens
 GapdhENSMUSG00000057666Mus musculus
 Gm10358ENSMUSG00000110469Mus musculus
 Gm11214ENSMUSG00000099294Mus musculus
 Gm12117ENSMUSG00000098456Mus musculus
 Gm15294ENSMUSG00000081607Mus musculus
 Gm3839ENSMUSG00000097148Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
gapdhs / glyceraldehyde-3-phosphate dehydrogenase, spermatogenic / O14556*ENSDARG0000003991475


Protein motifs (from Interpro)
Interpro ID Name
 IPR006424  Glyceraldehyde-3-phosphate dehydrogenase, type I
 IPR016040  NAD(P)-binding domain
 IPR020828  Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain
 IPR020829  Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
 IPR020830  Glyceraldehyde 3-phosphate dehydrogenase, active site
 IPR020831  Glyceraldehyde/Erythrose phosphate dehydrogenase family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000226 microtubule cytoskeleton organization ISS
 biological_processGO:0006006 glucose metabolic process IEA
 biological_processGO:0006096 glycolytic process IEA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0035606 peptidyl-cysteine S-trans-nitrosylation ISS
 biological_processGO:0050821 protein stabilization ISS
 biological_processGO:0051402 neuron apoptotic process ISS
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005829 cytosol ISS
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0015630 microtubule cytoskeleton ISS
 molecular_functionGO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity IEA
 molecular_functionGO:0008017 microtubule binding ISS
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0035605 peptidyl-cysteine S-nitrosylase activity ISS
 molecular_functionGO:0050661 NADP binding IEA
 molecular_functionGO:0051287 NAD binding IEA


Pathways (from Reactome)
Pathway description
Glycolysis
Gluconeogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000043457 gapdh / Q5XJ10 / glyceraldehyde-3-phosphate dehydrogenase / Gm3839* / P04406* / P16858* / Gm10358* / Gm11214* / Gm12117* / Gm15294*  / complex






 

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