ENSDARG00000043493


Danio rerio

Features
Gene ID: ENSDARG00000043493
  
Biological name :cltca
  
Synonyms : clathrin, heavy chain a (Hc) / cltca
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 28311031
Gene end: 28368913
  
Corresponding Affymetrix probe sets: Dr.26329.1.A1_at (Zebrafish Array)   Dr.3995.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000144157
Ensembl peptide - ENSDARP00000063848
NCBI entrez gene - 323579     See in Manteia.
RefSeq - NM_001005391
RefSeq - XM_005172640
RefSeq - XM_009305357
RefSeq - XM_009305358
RefSeq Peptide - NP_001005391
swissprot - F1R966
swissprot - A0A286YAZ4
ZFIN ID - ZDB-GENE-030131-2299
Ensembl - ENSDARG00000043493
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cltcb / clathrin, heavy chain b (Hc) / CLTC* / Q00610* / clathrin heavy chain*ENSDARG0000009071695
cltcl1 / clathrin, heavy chain-like 1ENSDARG0000009161877


Protein motifs (from Interpro)
Interpro ID Name
 IPR000547  Clathrin, heavy chain/VPS, 7-fold repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR012331  Clathrin, heavy chain, linker
 IPR015348  Clathrin, heavy chain, linker, core motif
 IPR016024  Armadillo-type fold
 IPR016341  Clathrin, heavy chain
 IPR022365  Clathrin, heavy chain, propeller repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0048268 clathrin coat assembly IEA
 cellular_componentGO:0005905 clathrin-coated pit IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030130 clathrin coat of trans-Golgi network vesicle IEA
 cellular_componentGO:0030132 clathrin coat of coated pit IEA
 cellular_componentGO:0030659 cytoplasmic vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0071439 clathrin complex IEA
 molecular_functionGO:0005198 structural molecule activity IEA
 molecular_functionGO:0032051 clathrin light chain binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000084 yolk yolk swollen , abnormal
Show

 ZFA:0000095 pharyngeal arch 3-7 skeleton pharyngeal arch 3-7 skeleton quality , abnormal
Show

 ZFA:0000109 forebrain forebrain decreased size , abnormal
Show

 ZFA:0000112 gut gut quality , abnormal
gut hypoplastic , abnormal
Show

 ZFA:0000114 heart heart quality , abnormal
Show

 ZFA:0000123 liver liver quality , abnormal
liver hypoplastic , abnormal
Show

 ZFA:0000128 midbrain midbrain decreased size , abnormal
Show

 ZFA:0000135 notochord notochord vacuole broken , abnormal
Show

 ZFA:0000180 caudal vein caudal vein dilated , abnormal
Show

 ZFA:0001114 head head circular , abnormal
head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk necrotic , abnormal
trunk curved dorsal , abnormal
Show

 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton increased thickness , abnormal
Show

 ZFA:0001285 intersegmental vessel intersegmental vessel morphology , abnormal
Show

 ZFA:0001286 caudal vein plexus caudal vein plexus morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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