ENSDARG00000043666


Danio rerio
rrnaabt1ssu-rrnaslsu-rrnarnaendonucleolyticcleavagerecognitionmotiftricistronictranscriptbindingdomainabtesfseparategeneratemature-end-etssmall-subunitprocessomeassemblynucleolusnucleicacid

Features
Gene ID: ENSDARG00000043666
  
Biological name :abt1
  
Synonyms : abt1 / activator of basal transcription 1
  
Possible biological names infered from orthology : Q9QYL7 / Q9ULW3
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 8483664
Gene end: 8489886
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000120413
Ensembl peptide - ENSDARP00000148206
Ensembl peptide - ENSDARP00000064112
NCBI entrez gene - 553568     See in Manteia.
RefSeq - NM_001020547
RefSeq Peptide - NP_001018383
swissprot - B0UYJ4
swissprot - Q503Z6
ZFIN ID - ZDB-GENE-050522-127
Ensembl - ENSDARG00000043666
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ABT1ENSG00000146109Homo sapiens
 Abt1ENSMUSG00000036376Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034353  ABT1/ESF2, RNA recognition motif


Gene Ontology (GO)
nitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationnitrogen compound metabnitrogen compound metabolic processcellular component biogcellular component biogenesiscellular metabolic proccellular metabolic processprimary metabolic proceprimary metabolic processorganic substance metaborganic substance metabolic processcellular component orgacellular component organization
organic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound binding
cellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellcellorganelleorganellemembrane-enclosed lumenmembrane-enclosed lumen
TypeGO IDTermEv.Code
 biological_processGO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0000472 endonucleolytic cleavage to generate mature 5"-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0000480 endonucleolytic cleavage in 5"-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0034462 small-subunit processome assembly IBA
 cellular_componentGO:0005730 nucleolus IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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