ENSMUSG00000036376


Mus musculus
rrnaAbt1ssu-rrnatranscriptionrnaslsu-rrnaendonucleolyticcleavagebindingtricistronictranscriptdna-templatedregulationpolymeraseiiabtesfrecognitionmotifrna-bindingdomainsuperfamilyseparategeneratemature-end-etsspinalcordmotor

Features
Gene ID: ENSMUSG00000036376
  
Biological name :Abt1
  
Synonyms : Abt1 / activator of basal transcription 1 / Q9QYL7
  
Possible biological names infered from orthology : Q9ULW3
  
Species: Mus musculus
  
Chr. number: 13
Strand: -1
Band: A3.1
Gene start: 23418361
Gene end: 23423866
  
Corresponding Affymetrix probe sets: 10408168 (MoGene1.0st)   1424751_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000045888
NCBI entrez gene - 30946     See in Manteia.
MGI - MGI:1353636
RefSeq - NM_013924
RefSeq Peptide - NP_038952
swissprot - Q9QYL7
Ensembl - ENSMUSG00000036376
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 abt1ENSDARG00000043666Danio rerio
 ABT1ENSG00000146109Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR034353  ABT1/ESF2, RNA recognition motif
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
nitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processanatomical structure developmentcellular developmental processcellular component organizationnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processanatomical structure developmentcellular developmental processcellular component organizationnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processanatomical structure developmentcellular developmental processcellular component organizationnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processanatomical structure developmentcellular developmental processcellular component organizationnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processanatomical structure developmentcellular developmental processcellular component organizationnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processanatomical structure developmentcellular developmental processcellular component organizationnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processanatomical structure developmentcellular developmental processcellular component organizationnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processanatomical structure developmentcellular developmental processcellular component organizationnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processanatomical structure developmentcellular developmental processcellular component organizationnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processanatomical structure developmentcellular developmental processcellular component organizationnitrogen compounitrogen compound metabolic processcellular componcellular component biogenesiscellular metabocellular metabolic processprimary metabolprimary metabolic processorganic substanorganic substance metabolic processbiosynthetic prbiosynthetic processanatomical struanatomical structure developmentcellular develocellular developmental processcellular componcellular component organization
organic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound binding
cellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellcellorganelleorganelleprotein-containing complexprotein-containing complexmembrane-enclosed lumenmembrane-enclosed lumen
TypeGO IDTermEv.Code
 biological_processGO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0000472 endonucleolytic cleavage to generate mature 5"-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0000480 endonucleolytic cleavage in 5"-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IDA
 biological_processGO:0006366 transcription by RNA polymerase II IDA
 biological_processGO:0021522 spinal cord motor neuron differentiation IGI
 biological_processGO:0034462 small-subunit processome assembly IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005667 transcription factor complex IDA
 cellular_componentGO:0005730 nucleolus IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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