ENSDARG00000044290


Danio rerio
zincfingerbindingrph3alfyvephd-typerabintracellularrab-bindingdomainringfyve-relatedeffectornocproteintransportregulationexocytosisplasmamembranecalciumioncalcium-dependentphospholipidgtpase

Features
Gene ID: ENSDARG00000044290
  
Biological name :rph3al
  
Synonyms : rabphilin 3A-like (without C2 domains) / rph3al
  
Possible biological names infered from orthology : Q768S4 / Q9UNE2 / Rab effector Noc2
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 60934345
Gene end: 61035016
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000065024
Ensembl peptide - ENSDARP00000148439
swissprot - B8K0F3
ZFIN ID - ZDB-GENE-090605-1
Ensembl - ENSDARG00000044290
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPH3ALENSGALG00000037314Gallus gallus
 Q9UNE2ENSG00000181031Homo sapiens
 Q768S4ENSMUSG00000020847Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR010911  Rab-binding domain
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017455  Zinc finger, FYVE-related
 IPR030538  Rab effector Noc2


Gene Ontology (GO)
macromolecule localizationestablishment of localizationcellular localizationmacromolecule localizationestablishment of localizationcellular localizationmacromolecule localizationestablishment of localizationcellular localizationmacromolecule localizationestablishment of localizationcellular localizationmacromolecule localizationestablishment of localizationcellular localizationmacromolecule localizationestablishment of localizationcellular localizationmacromolecule localizationestablishment of localizationcellular localizationmacromolecule localizationestablishment of localizationcellular localizationmacromolecule localizationestablishment of localizationcellular localizationmacromolecule localizationestablishment of localizationcellular localizationmacromolecule localizationmacromolecule localizationestablishment of localizationestablishment of localizationcellular localizationcellular localization
ion bindinglipid bindingprotein bindingion bindinglipid bindingprotein bindingion bindinglipid bindingprotein bindingion bindinglipid bindingprotein bindingion bindinglipid bindingprotein bindingion bindinglipid bindingprotein bindingion bindinglipid bindingprotein bindingion bindinglipid bindingprotein bindingion bindinglipid bindingprotein bindingion bindinglipid bindingprotein bindingion bindingion bindinglipid bindinglipid bindingprotein bindingprotein binding
cellmembranecellmembranecellmembranecellmembranecellmembranecellmembranecellmembranecellmembranecellmembranecellmembranecellcellmembranemembrane
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0017157 regulation of exocytosis IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005886 plasma membrane IBA
 molecular_functionGO:0005509 calcium ion binding IBA
 molecular_functionGO:0005544 calcium-dependent phospholipid binding IBA
 molecular_functionGO:0017137 Rab GTPase binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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