ENSDARG00000044511


Danio rerio

Features
Gene ID: ENSDARG00000044511
  
Biological name :etv5b
  
Synonyms : ets variant 5b / etv5b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 14030903
Gene end: 14040161
  
Corresponding Affymetrix probe sets: Dr.7714.1.S1_at (Zebrafish Array)   NM_131205_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000065360
Ensembl peptide - ENSDARP00000149157
Ensembl peptide - ENSDARP00000151302
Ensembl peptide - ENSDARP00000151752
NCBI entrez gene - 30452     See in Manteia.
RefSeq - NM_001309209
RefSeq - NM_131205
RefSeq - XM_005165860
RefSeq - XM_005165861
RefSeq Peptide - NP_571280
RefSeq Peptide - NP_001296138
swissprot - F1QK52
ZFIN ID - ZDB-GENE-991228-4
Ensembl - ENSDARG00000044511
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
etv5a / ets variant 5a / ETV1* / P41164* / P50549* / ETS variant 1* / ETS translocation variant 1 *ENSDARG0000006976366
etv1 / ets variant 1ENSDARG0000010195952
etv4 / ets variant 4 / P28322* / P43268* / ETS translocation variant 4 *ENSDARG0000001830345
fli1a / Fli-1 proto-oncogene, ETS transcription factor a / FLI1* / P26323* / Q01543* / Fli-1 proto-oncogene, ETS transcription factor* / Friend leukemia integration 1 transcription factor *ENSDARG0000005463216
fli1b / Fli-1 proto-oncogene, ETS transcription factor bENSDARG0000004008015
erg / v-ets avian erythroblastosis virus E26 oncogene homolog / FLI1* / Q01543* / Fli-1 proto-oncogene, ETS transcription factor*ENSDARG0000007730415
ets2 / v-ets avian erythroblastosis virus E26 oncogene homolog 2 / ETS1* / P14921* / P27577* / Protein C-ets-1 * / ETS proto-oncogene 1, transcription factor*ENSDARG0000010398015
etv2 / ets variant 2 / O00321* / P41163* / ETS translocation variant 2 *ENSDARG0000005386813
gabpa / GA binding protein transcription factor, alpha subunit / Q00422* / Q06546* / GA-binding protein alpha chain *ENSDARG0000006928913
fev / A3FEM2 / FEV (ETS oncogene family)ENSDARG0000000924212
elk4 / ELK4, ETS-domain protein / P28324* / P41158* / ELK4, ETS transcription factor* / ETS domain-containing protein Elk-4 *ENSDARG0000007709211
elk3 / ELK3, ETS-domain protein / P41970* / P41971* / ELK3, ETS transcription factor* / ETS domain-containing protein Elk-3 *ENSDARG0000001868810
erfl3 / Ets2 repressor factor like 3ENSDARG0000006280110
erf / Ets2 repressor factorENSDARG0000006341710
elk1 / ELK1, member of ETS oncogene family / P19419* / P41969* / ELK1, ETS transcription factor* / ETS domain-containing protein Elk-1 *ENSDARG0000007806610
erfl1 / Ets2 repressor factor like 1 / ERF* / Gm4881* / P50548* / AC010616.1* / ETS2 repressor factor*ENSDARG0000008689210
si:ch211-265g22.4ENSDARG000000765128
CABZ01069595.1 / ELK4* / P28324* / ELK4, ETS transcription factor*ENSDARG000000244316


Protein motifs (from Interpro)
Interpro ID Name
 IPR000418  Ets domain
 IPR006715  PEA3-type ETS-domain transcription factor, N-terminal
 IPR011991  ArsR-like helix-turn-helix domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007346 regulation of mitotic cell cycle IMP
 biological_processGO:0008045 motor neuron axon guidance IMP
 biological_processGO:0021979 hypothalamus cell differentiation IMP
 biological_processGO:0035108 limb morphogenesis IGI
 biological_processGO:0048793 pronephros development IGI
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000032 hypothalamus hypothalamus mitotic S phase increased duration , abnormal
hypothalamus has fewer parts of type serotonin secreting cell , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000141 pectoral fin bud pectoral fin bud decreased size , abnormal
Show

 ZFA:0001094 whole organism whole organism viability , abnormal
whole organism edematous , abnormal
Show

 ZFA:0001557 pronephric glomerulus pronephric glomerulus increased distance pronephric glomerulus , abnormal
pronephric glomerulus hypoplastic , abnormal
pronephric glomerulus unfused from pronephric glomerulus , abnormal
Show

 ZFA:0009052 motor neuron motor neuron axon morphology , abnormal
motor neuron axon truncated , abnormal
motor neuron axon branchiness , abnormal
motor neuron axon morphology , ameliorated
motor neuron axon branchiness , ameliorated
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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