ENSDARG00000044938


Danio rerio

Features
Gene ID: ENSDARG00000044938
  
Biological name :cbx2
  
Synonyms : cbx2 / chromobox homolog 2 (Drosophila Pc class)
  
Possible biological names infered from orthology : chromobox 2 / Chromobox protein homolog 2 / P30658 / Q14781
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 10152092
Gene end: 10164759
  
Corresponding Affymetrix probe sets: Dr.18575.1.S1_a_at (Zebrafish Array)   NM_194373_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000066052
NCBI entrez gene - 327291     See in Manteia.
RefSeq - NM_194373
RefSeq Peptide - NP_919354
swissprot - F1Q982
ZFIN ID - ZDB-GENE-030131-5502
Ensembl - ENSDARG00000044938
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CBX2ENSGALG00000023338Gallus gallus
 CBX2ENSG00000173894Homo sapiens
 Cbx2ENSMUSG00000025577Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cbx8b / chromobox homolog 8b / CBX8* / Q9QXV1* / Q9HC52* / chromobox 8* / Chromobox protein homolog 8 *ENSDARG0000009877117
cbx4 / chromobox homolog 4 (Pc class homolog, Drosophila) / O55187* / O00257* / chromobox 4* / E3 SUMO-protein ligase CBX4 *ENSDARG0000009944117
cbx8a / chromobox homolog 8a (Pc class homolog, Drosophila) / CBX8* / Q9QXV1* / Q9HC52* / chromobox 8* / Chromobox protein homolog 8 *ENSDARG0000008732716
cbx6b / chromobox homolog 6b / CBX6* / Q9DBY5* / O95503* / chromobox 6* / Chromobox protein homolog 6 *ENSDARG0000009754316
cbx7a / chromobox homolog 7a / CBX7* / Q8VDS3* / O95931* / chromobox 7* / Chromobox protein homolog 7 *ENSDARG0000003802514
cbx6a / chromobox homolog 6a / CBX6* / Q9DBY5* / O95503* / chromobox 6* / Chromobox protein homolog 6 *ENSDARG0000007105114
cbx7b / chromobox homolog 7b / CBX7* / Q8VDS3* / O95931* / chromobox 7* / Chromobox protein homolog 7 *ENSDARG0000008718113


Protein motifs (from Interpro)
Interpro ID Name
 IPR000953  Chromo/chromo shadow domain
 IPR016197  Chromo-like domain superfamily
 IPR023779  Chromo domain, conserved site
 IPR023780  Chromo domain
 IPR033773  CBX family C-terminal motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA


Pathways (from Reactome)
Pathway description
Oxidative Stress Induced Senescence
SUMOylation of DNA damage response and repair proteins
SUMOylation of transcription cofactors
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known
Regulation of PTEN gene transcription


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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