ENSDARG00000097543


Danio rerio
chromodomaincbx6brunxshadowchromo-likesuperfamilyconservedsitecbxfamilyc-terminalmotifhematopoieticprogenitorcelldifferentiationnucleusoxidativestressinducedsenescenceinteractsco-factorspreciseeffecttargetsknownregulationptengene

Features
Gene ID: ENSDARG00000097543
  
Biological name :cbx6b
  
Synonyms : cbx6b / chromobox homolog 6b
  
Possible biological names infered from orthology : CBX6 / chromobox 6 / Chromobox protein homolog 6 / O95503 / Q9DBY5
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 24458204
Gene end: 24464794
  
Corresponding Affymetrix probe sets: Dr.15642.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000127727
Ensembl peptide - ENSDARP00000128181
Ensembl peptide - ENSDARP00000129580
Ensembl peptide - ENSDARP00000147491
swissprot - X1WBY5
swissprot - X1WD84
swissprot - X1WH70
ZFIN ID - ZDB-GENE-110613-1
Ensembl - ENSDARG00000097543
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CBX6ENSGALG00000036867Gallus gallus
 CBX6ENSG00000183741Homo sapiens
 Cbx6ENSMUSG00000089715Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cbx6a / chromobox homolog 6a / CBX6* / Q9DBY5* / O95503* / chromobox 6* / Chromobox protein homolog 6 *ENSDARG0000007105138
cbx8b / chromobox homolog 8b / CBX8* / Q9QXV1* / Q9HC52* / chromobox 8* / Chromobox protein homolog 8 *ENSDARG0000009877122
cbx8a / chromobox homolog 8a (Pc class homolog, Drosophila) / CBX8* / Q9QXV1* / Q9HC52* / chromobox 8* / Chromobox protein homolog 8 *ENSDARG0000008732721
cbx4 / chromobox homolog 4 (Pc class homolog, Drosophila) / O55187* / O00257* / chromobox 4* / E3 SUMO-protein ligase CBX4 *ENSDARG0000009944119
cbx7a / chromobox homolog 7a / CBX7* / Q8VDS3* / O95931* / chromobox 7* / Chromobox protein homolog 7 *ENSDARG0000003802516
cbx2 / chromobox homolog 2 (Drosophila Pc class) / Q14781* / P30658* / chromobox 2* / Chromobox protein homolog 2 *ENSDARG0000004493816
cbx7b / chromobox homolog 7b / CBX7* / Q8VDS3* / O95931* / chromobox 7* / Chromobox protein homolog 7 *ENSDARG0000008718115


Protein motifs (from Interpro)
Interpro ID Name
 IPR000953  Chromo/chromo shadow domain
 IPR016197  Chromo-like domain superfamily
 IPR023779  Chromo domain, conserved site
 IPR023780  Chromo domain
 IPR033773  CBX family C-terminal motif


Gene Ontology (GO)
anatomical structure developmentcellular developmental processanatomical structure developmentcellular developmental processanatomical structure developmentcellular developmental processanatomical structure developmentcellular developmental processanatomical structure developmentcellular developmental processanatomical structure developmentcellular developmental processanatomical structure developmentcellular developmental processanatomical structure developmentcellular developmental processanatomical structure developmentcellular developmental processanatomical structure developmentcellular developmental processanatomical structure developmentanatomical structure developmentcellular developmental processcellular developmental process
cellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellcellorganelleorganelle
TypeGO IDTermEv.Code
 biological_processGO:0002244 hematopoietic progenitor cell differentiation IMP
 cellular_componentGO:0005634 nucleus IEA


Pathways (from Reactome)
Pathway description
Oxidative Stress Induced Senescence
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known
Regulation of PTEN gene transcription


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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